View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_33 (Length: 326)
Name: NF11137_low_33
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 55239594 - 55239295
Alignment:
| Q |
19 |
aatcaggcacagcttctttctcctcattagcaatctgcagcatagcaaaggnnnnnnnctt--cttcaataagttctataatttaatagttgtgtatatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| |
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| T |
55239594 |
aatcaggcacagcttctttctcctcattagcaatctgcagcatagcaaaggttttttttttttcttcaacaagttctataatttaatagttgtgtatatg |
55239495 |
T |
|
| Q |
117 |
aatgtgattgattaccacttatttgtttcttttcttctgcagattttatcttcatccagctagctacctagccatcttactagtcttttttcttgtgaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55239494 |
aatgtgattgattaccacttatttgtttcttttcttctgcagattttatcttcatccagcaagctacctagccatcttactagtcttttttcttgtgaca |
55239395 |
T |
|
| Q |
217 |
tgataatgaagaag-nnnnnnnnnctctagttgtgggatcacacaacaaatgaattggtacggtaggtaggaaattaattcattaatctgttgtaccttt |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55239394 |
tgataatgaagaagaaaaaaaaaactctagttgtgggatcacacaacaaatgaattggtacggtaggtaggaaattaattcattaatctgttgtaccttt |
55239295 |
T |
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