View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_39 (Length: 268)
Name: NF11137_low_39
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 24377588 - 24377827
Alignment:
| Q |
18 |
aaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttgaatactaaggttttattctgctacaaattctg |
117 |
Q |
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| T |
24377588 |
aaaaggactggtaaaattctaaattgcttcataaccaattca------ttttcatatgcatgcatttgaatactaagcttttatcctgctacaaattctg |
24377681 |
T |
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| Q |
118 |
caggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattgg |
217 |
Q |
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| T |
24377682 |
caggaaatttaaagagtgccttggctcatatcatcactggtgttatcgggtctggtgttttgtcattggcatggagtactgctcaactaggatggattgg |
24377781 |
T |
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| Q |
218 |
agggccacttgcattgctttcttgtgcaatagctacctatgcttct |
263 |
Q |
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| T |
24377782 |
agggccacttgcattactttcttgtgcaatagctacctatgtttct |
24377827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 257
Target Start/End: Original strand, 24400473 - 24400664
Alignment:
| Q |
65 |
attttcatatgcatcaatttgaatactaaggttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttatt |
164 |
Q |
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| T |
24400473 |
attttcatatacttgaatttgaatactgaagttttattcggg-ataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttatt |
24400571 |
T |
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| Q |
165 |
gggtctggtgttttgtcattggcatggagtactgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctat |
257 |
Q |
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| T |
24400572 |
ggttctggtgttttgtctttggcatggagtatttctcaattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
24400664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 24412972 - 24413105
Alignment:
| Q |
116 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
215 |
Q |
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| T |
24412972 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24413071 |
T |
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| Q |
216 |
ggagggccacttgcattgctttcttgtgcaatag |
249 |
Q |
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| T |
24413072 |
ggaggaccagttaccttgctttgttgtgcaatag |
24413105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 24421069 - 24420936
Alignment:
| Q |
116 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
215 |
Q |
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| T |
24421069 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24420970 |
T |
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| Q |
216 |
ggagggccacttgcattgctttcttgtgcaatag |
249 |
Q |
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| T |
24420969 |
ggaggaccagttaccttgctttgttgtgcaatag |
24420936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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