View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11137_low_4 (Length: 732)

Name: NF11137_low_4
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11137_low_4
NF11137_low_4
[»] chr3 (1 HSPs)
chr3 (20-727)||(41723426-41724133)


Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 20 - 727
Target Start/End: Complemental strand, 41724133 - 41723426
Alignment:
Q  20 cacttatgctataaatgtttagtgaagttgtttatgcaaacaaggcctaacaacaaataaaattgagacaaaagtttgtagaacttataaatcttacata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41724133 cacttatgctataaatgtttagtgaagttgtttatgcaaacaaggcctaacaacaaataaaattgagacaaaagtttgtagaacttataaatcttacata 41724034  T
Q  120 agtcttcatttctttgtggcaagtagtgatcagaaataggcgaaaattgttcttgttcatttgaaatatgtgaggagccggttgaagaactatgctgcat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41724033 agtcttcatttctttgtggcaagtagtgatcagaaataggcgaaaattgttcttgttcatttgaaatatgtgaggagccggttgaagaactatgctgcat 41723934  T
Q  220 gcctcttgaactagggaaaacatccttcctagaactcaagttcatcaacatgtttttaaaggaatgtctgtcatgttttccttctgaagcttctctccac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723933 gcctcttgaactagggaaaacatccttcctagaactcaagttcatcaacatgtttttaaaggaatgtctgtcatgttttccttctgaagcttctctccac 41723834  T
Q  320 ttttctgtttcatgctcagcatgcttccttctagcctttgataacttaacctctttcaacagcatttgcttttctgcagtatcaagtttagattttctca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723833 ttttctgtttcatgctcagcatgcttccttctagcctttgataacttaacctctttcaacagcatttgcttttctgcagtatcaagtttagattttctca 41723734  T
Q  420 acattgctgacaaaatcttatctttttgttccaaatccttgtgaaattttgcaatctccaaagttaatttctgaaccatcaaatcagactcctctttgtt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723733 acattgctgacaaaatcttatctttttgttccaaatccttgtgaaattttgcaatctccaaagttaatttctgaaccatcaaatcagactcctctttgtt 41723634  T
Q  520 ctccatgacagcaataagttcctcttttgtagcatccaaatgcttaacagcgcgaccgagttcagcttcaaggtgtctttgatttgaaaccaactcaatg 619  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723633 ctccatgacagcaataagttcctcttttgcagcatccaaatgcttaacagcgcgaccgagttcagcttcaaggtgtctttgatttgaaaccaactcaatg 41723534  T
Q  620 aaagcagttttgtgtttcctgagatcagaagaatgttcttgaccttcacgtttagaagattctctcaattcttctgcatctttttcagcttttttcgcct 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723533 aaagcagttttgtgtttcctgagatcagaagaatgttcttgaccttcacgtttagaagattctctcaattcttctgcatctttttcagcttttttcgcct 41723434  T
Q  720 ttgcttct 727  Q
    || |||||    
T  41723433 tttcttct 41723426  T

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