View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_45 (Length: 247)
Name: NF11137_low_45
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 14664861 - 14665075
Alignment:
| Q |
15 |
aaataatgcatagtttgcatattagagtagagacatatgatggtccgaatatggaatttgaggtttgaaagtgaaagggaaaactgtgtgcaggaatcag |
114 |
Q |
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| T |
14664861 |
aaataatgcatagtttgcatattagagtagagacatatgatggtctgaatatggaatttgaggtttgaaagtgaaagggaaaactgtgtgcaggaatcaa |
14664960 |
T |
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| Q |
115 |
ag-nnnnnnnnattgtcttggtgcattcactacacccattaagctaatcaacattagtcccactttaaaacaatttcaataatttaatcaaaccgcattc |
213 |
Q |
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| T |
14664961 |
agtttttttttattgtcttggtgcattcactacgcccattaagctaatcaacattagtcccactttaaaacaatttcattgatttaatcaaaccgcattc |
14665060 |
T |
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| Q |
214 |
ataagcaaaatgatc |
228 |
Q |
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| T |
14665061 |
ataagcaaaatgatc |
14665075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 14668095 - 14668171
Alignment:
| Q |
152 |
ttaagctaatcaacattagtcccactttaaaacaatttcaataatttaatcaaaccgcattcataagcaaaatgatc |
228 |
Q |
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| T |
14668095 |
ttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgatc |
14668171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 14686253 - 14686215
Alignment:
| Q |
15 |
aaataatgcatagtttgcatattagagtagagacatatg |
53 |
Q |
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| T |
14686253 |
aaataatgcatagcttgcatattagagtagagacatatg |
14686215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 30735570 - 30735440
Alignment:
| Q |
92 |
ggaaaactgtgtgcaggaatcagagnnnnnnnn-attgtcttggtgcattcactacacccattaagctaatcaacattagtcccactttaaaacaatttc |
190 |
Q |
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| T |
30735570 |
ggaaaactgtgtgcaggaatcagagtttttttttattgtcttggtgcattcactacgcccattaagctaatcaacattagtcccactttaaaacaatttc |
30735471 |
T |
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| Q |
191 |
aataatttaatcaaaccgcattcataagcaa |
221 |
Q |
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| T |
30735470 |
atcaatttaatcaaaccgcattcataagcaa |
30735440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 30733105 - 30733030
Alignment:
| Q |
152 |
ttaagctaatcaacattagtcccactttaaaacaatttcaataatttaatcaaaccgcattcataagcaaaatgat |
227 |
Q |
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| T |
30733105 |
ttaagctggtcaacattagtctcactttaacacaatttcattaatttaatcaaaccgaattcacaagctaaatgat |
30733030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 8995466 - 8995419
Alignment:
| Q |
69 |
aatttgaggtttgaaagtgaaagggaaaactgtgtgcaggaatcagag |
116 |
Q |
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| T |
8995466 |
aatttgaggtttcaaagtgaaagggaaaactatgtgctggagtcagag |
8995419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 30733254 - 30733217
Alignment:
| Q |
16 |
aataatgcatagtttgcatattagagtagagacatatg |
53 |
Q |
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|||| |||||||||||||| |||||||||||||||||| |
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| T |
30733254 |
aatactgcatagtttgcatgttagagtagagacatatg |
30733217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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