View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_47 (Length: 239)
Name: NF11137_low_47
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 25589062 - 25588853
Alignment:
| Q |
18 |
atatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgag |
117 |
Q |
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| T |
25589062 |
atatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaagctggcagcattttcttcagctgag |
25588963 |
T |
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| Q |
118 |
gctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25588962 |
gctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactg |
25588863 |
T |
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| Q |
218 |
tccctatgct |
227 |
Q |
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|||| ||||| |
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| T |
25588862 |
tcccaatgct |
25588853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 25598714 - 25598505
Alignment:
| Q |
18 |
atatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25598714 |
atatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaagctggcagcattttcttcagctgag |
25598615 |
T |
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| Q |
118 |
gctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactg |
217 |
Q |
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| T |
25598614 |
gctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctgaacaaaacggtgttgttcgtgattgatgcagtattcactg |
25598515 |
T |
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| Q |
218 |
tccctatgct |
227 |
Q |
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|||| ||||| |
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| T |
25598514 |
tcccaatgct |
25598505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 25584221 - 25584062
Alignment:
| Q |
18 |
atatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgag |
117 |
Q |
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|||||||||| |||||||||| |||||| ||| | |||||| |||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||| |
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| T |
25584221 |
atatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccaggaaagtgaaaagtagcagcattttcttcagctgag |
25584122 |
T |
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| Q |
118 |
gctttcaatgcactgactagaggaggtaggccactctgctgaagcactggtgaattgctg |
177 |
Q |
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| T |
25584121 |
gctttcaatgcactgactaaaggaggtaggccactctgccgaatctctggtgaattgctg |
25584062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 48465930 - 48465798
Alignment:
| Q |
30 |
tccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgca |
129 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48465930 |
tccaatgagttggatcaatgaagaaggagcggcatggcctctgtcgtgtccaggaaagtgaaaactggcagcattttcttcagctgaggctttcaatgca |
48465831 |
T |
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| Q |
130 |
ctgactagaggaggtaggccactctgctgaagc |
162 |
Q |
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||||||| ||||| || ||||||| |||||| |
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| T |
48465830 |
gagactagaagaggttgggcactctgttgaagc |
48465798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 42076730 - 42076584
Alignment:
| Q |
18 |
atatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaaactggcagcattttcttcagctgag |
117 |
Q |
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|||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
42076730 |
atatagtcttattccaatgagttgggtcaatgaagaaggagcggcatggcctctgttgtgtccacgaaagtgaaaactggcagcattttcttcaagtgag |
42076631 |
T |
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| Q |
118 |
gctttcaatgcac--tgactagaggaggtaggccactctgctgaagc |
162 |
Q |
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||||||||||||| ||||| ||||||| || |||||||||||||| |
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| T |
42076630 |
gctttcaatgcacagagactaaaggaggttgggcactctgctgaagc |
42076584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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