View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_55 (Length: 218)
Name: NF11137_low_55
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2892198 - 2891978
Alignment:
| Q |
1 |
cttctattctatgttcatctctctatg---gtagtagtaactcatcatctcaaattaacaacttccaaaatcaacaacctttgctcaatcctcaccttct |
97 |
Q |
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| T |
2892198 |
cttctattctatgttcatctctctatgctagtagtagtaactcatcatctcaaattaacaacttccaaaatcaacaacctttgctcaatcctgaccttct |
2892099 |
T |
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| Q |
98 |
aaacttagcttcctcgttcttccaacatcaacaagattataataatcctcaaatacagaaccaagttccactttcacattttgtccaatttcaagaccaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2892098 |
aaacttagcttcctcgttcttccaacatcaacaagattataataatcctcaaatacagaaccaagttccactttcacattttctccaatttcaagaccaa |
2891999 |
T |
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| Q |
198 |
cttccacaagtaaattccaat |
218 |
Q |
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||||||||||||||||||||| |
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| T |
2891998 |
cttccacaagtaaattccaat |
2891978 |
T |
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