View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_58 (Length: 212)
Name: NF11137_low_58
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 8734863 - 8735048
Alignment:
| Q |
11 |
agatgaaaataaagactaagcacgagagtatgaaactgccatgacatctgcaagaaggaataaatgaagctcaatctgtggattgttgactaaattacta |
110 |
Q |
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| T |
8734863 |
agatgaaaataaagactaagcacaagagtatgaaactcccatgacatctacaagaaggaataaatgaagctcaatctgtggattgttgactaagttacta |
8734962 |
T |
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| Q |
111 |
gaagttttgacatcaaatttagcgagcacgtctgcactcatattacattctcgaaaagtatgttgatgtcgcacggtcgaattctt |
196 |
Q |
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| T |
8734963 |
gaagttttgacatcaaatttagcgagtacgtctgcactcatattaccttctcgaaaagtaagttgatgtcgcacggtcgaattctt |
8735048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 8752377 - 8752462
Alignment:
| Q |
14 |
tgaaaataaagactaagcacgagagtatgaaactgccatgacatctgcaagaaggaataaatgaagctcaatctgtggattgttga |
99 |
Q |
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| T |
8752377 |
tgaaaacaaagatcaagcatgagagtatgaaactcccatgacatccacaagaagaactaactgaagcttaatcgaaggattgttga |
8752462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 25213630 - 25213557
Alignment:
| Q |
13 |
atgaaaataaagactaagcacgagagtatgaaactgccatgacatctgcaagaaggaataaatgaagctcaatc |
86 |
Q |
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| T |
25213630 |
atgaaaacaaagactaagcacgagagtatggaactctcatggcatttgcaaaaaggaataattgaagctcaatc |
25213557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 25217173 - 25217100
Alignment:
| Q |
13 |
atgaaaataaagactaagcacgagagtatgaaactgccatgacatctgcaagaaggaataaatgaagctcaatc |
86 |
Q |
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| T |
25217173 |
atgaaaacaaagactaagcacgagagtatggaactctcatggcatttgcaaaaaggaataattgaagctcaatc |
25217100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 29712049 - 29711989
Alignment:
| Q |
128 |
tttagcgagcacgtctgcactcatattacattctcgaaaagtatgttgatgtcgcacggtc |
188 |
Q |
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| T |
29712049 |
tttagcgagaacgtctgccctcatattaccgtctcgaaaagtatgttgaagtcgcacggtc |
29711989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 43097351 - 43097274
Alignment:
| Q |
105 |
ttactagaagttttgacatcaaatttagcgagcacgtctgcactcatattacattctcgaaaagtatgttgatgtcgc |
182 |
Q |
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| T |
43097351 |
ttactagaagttctagcaccaagtttagcgagaacttctacactcatgttaccttctcaaaaagtatgttgaagtcgc |
43097274 |
T |
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