View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_6 (Length: 550)
Name: NF11137_low_6
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Complemental strand, 44703203 - 44702667
Alignment:
| Q |
17 |
gacatcacctcttctttttcaaaacctcctttgcatatgattctttaaacaatattctccactaagctagaatccaatacactgatcccgattatgcaga |
116 |
Q |
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| T |
44703203 |
gacatcacctcttctttttcaaaacctcctttgcatatgattctttaaacaatattctccactaagctagaatccaatacattgatcccgattatgcaga |
44703104 |
T |
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| Q |
117 |
atcggaaaggcactatgtcaaaatttacttttatcttatagggatcagattccacaagtagttcaccaattttaaaaagagcataatctcacaggatgct |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44703103 |
atcggaaagtcactatgtcaaaatttacttttatcttatagggatcagattccacaagtagttcaccaattttaaaaagagcataatctcacaggatgct |
44703004 |
T |
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| Q |
217 |
gatgcggaaaagagaagcttcttcctgagcttaaattgtttgtctgcttcttcttgttacctaaact------------attcatgcttttcttcatgat |
304 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
44703003 |
gatgctgaaaagagaagcttcttcctgagcttaaattgtttgtctgcttcttctggttacctaaactattctccttcatattcatgcttttcttcatgat |
44702904 |
T |
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| Q |
305 |
aagttggttaatagttaaggactaacctccccaaaaaattcttgacaagagcggcatacgttgttacagtgattaatccttggttgaatgttttatgata |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44702903 |
aagttggttaatagttaaggactaacctccccaaaaaattcttgacaagagcggcatacgttgttacagtgattaatccttggttgaatgttttgtgata |
44702804 |
T |
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| Q |
405 |
tactaaatattagacagggaaatgaatgacttccaaaaactttttcaaatgtacat---------nnnnnnnnnttacacaataaaatacatcatgtggc |
495 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
44702803 |
tactaaatattagacagggaaatgaataacttccaaaaactttttcaaatttacataaaaaaaaaaaaaaaaaattacacaataaaatacatcatgtggc |
44702704 |
T |
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| Q |
496 |
attccttaatactaaaaaatacagagcttgtagaaca |
532 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44702703 |
attccttaatactaaaaaatacagagcttgtagaaca |
44702667 |
T |
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