View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11137_low_61 (Length: 207)
Name: NF11137_low_61
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_61 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 33119530 - 33119332
Alignment:
| Q |
14 |
ccgcttttttcaatcaagtacatgcttaaaatggaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccgtttgattggatgcaaaac |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33119530 |
ccgcttttttcaatcaattacatgcttaaaatggaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccgtttgattggatgcaaaac |
33119431 |
T |
|
| Q |
114 |
cggctaactgaataatggctggactgt-----agtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33119430 |
cggctaactgaataatggctggactgtagtatagtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacc |
33119332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 33116383 - 33116183
Alignment:
| Q |
7 |
ctttctcccgcttttttcaatcaagtacatgcttaaaatggaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccgtttgattggat |
106 |
Q |
| |
|
|||||||||| |||| || || || || ||||||| || |||||||| ||||| | |||| || || || |||||||| | ||| |||||||| ||| |
|
|
| T |
33116383 |
ctttctcccggttttatcgatgaaatatatgcttataagagaaccaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattagat |
33116284 |
T |
|
| Q |
107 |
gcaaaaccggctaactgaataatggctggactgtagtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaac |
206 |
Q |
| |
|
|||||||| |||| |||| ||| | ||| ||| ||||||| || || |||||||| |||||||||||||| ||| ||| |||||||||||||| |||| |
|
|
| T |
33116283 |
gcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaac |
33116184 |
T |
|
| Q |
207 |
c |
207 |
Q |
| |
|
| |
|
|
| T |
33116183 |
c |
33116183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 21559174 - 21559352
Alignment:
| Q |
29 |
aagtacatgcttaaaatggaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccgtttgattggatgcaaaaccggctaactgaataa |
128 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| | ||||| ||| | ||| |||||||||||||| |||| || ||||||||||| |||| |||| | |
|
|
| T |
21559174 |
aagtatatgctcaaaatcgaaccaaatgcattaattccagctgtgacgagcgacagaagaagtgctgttttgtttgatgcaaaaccagctagttgaacga |
21559273 |
T |
|
| Q |
129 |
tggctggactgtagtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacc |
207 |
Q |
| |
|
||| ||||||||||||||| || ||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
21559274 |
tggttggactgtagtacattactgtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatataaacc |
21559352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 21492507 - 21492667
Alignment:
| Q |
47 |
gaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccgtttgattggatgcaaaaccggctaactgaataatggctggactgtagtaca |
146 |
Q |
| |
|
||||| |||||||| || ||||| || || || |||||||||||||| ||| || || ||||||||||| | ||||| ||| | ||||||||||||| |
|
|
| T |
21492507 |
gaaccgaatgcattgaggccagaagtgattagagacagaagaagtgctgttctttttgacgcaaaaccggccagctgaacaattgaaggactgtagtaca |
21492606 |
T |
|
| Q |
147 |
tgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacc |
207 |
Q |
| |
|
| || |||||||| || |||||| ||||||| |||||||| | |||||||||||||| |
|
|
| T |
21492607 |
ttaccgtgttgataccggtaaattgctggaaaaacgcaagtcctacacctgcatataaacc |
21492667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 1084029 - 1084229
Alignment:
| Q |
7 |
ctttctcccgcttttttcaatcaagtacatgcttaaaatggaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccgtttgattggat |
106 |
Q |
| |
|
|||||||||| |||| ||||| || || ||||||| || |||||||| | ||| | |||| || || || |||||||| | ||| |||||||| ||| |
|
|
| T |
1084029 |
ctttctcccggttttatcaatgaaatatatgcttataagcgaaccaaacgtattcaacccagcagtgataagagacagaagcattgcggtttgattagat |
1084128 |
T |
|
| Q |
107 |
gcaaaaccggctaactgaataatggctggactgtagtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaac |
206 |
Q |
| |
|
|||||||| |||| |||| ||| | ||| ||| ||||||| || | |||||||| |||||||||||||| ||| ||| |||||||||||||| |||| |
|
|
| T |
1084129 |
gcaaaaccagctagttgaacaatagttgggctgaagtacattacgatattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaac |
1084228 |
T |
|
| Q |
207 |
c |
207 |
Q |
| |
|
| |
|
|
| T |
1084229 |
c |
1084229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University