View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11137_low_9 (Length: 523)
Name: NF11137_low_9
Description: NF11137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11137_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 36135599 - 36135086
Alignment:
| Q |
18 |
aaatatgtagaggactaaaatttccaacacataagttgaaaagagtccgctcttagaacccaagagacgactctcatggtaacaccaagcttttatcaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135599 |
aaatatgtagaggactaaaatttccaacacataagttgaaaagagtccactcttagaacccaagagacgactctcatggtaacaccaagcttttatcaat |
36135500 |
T |
|
| Q |
118 |
ataacaatgcgcttgaatatatgattccgacttatcaaatgatcaacttgaaataaccaaatatttttaagagattttgcaaaataaaaaatatggttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
36135499 |
ataacaatgcgcttgaatatatgattccgacttatcaaatgatcaacttgaaataaccaattatttttaagagatcttgcaaaataaaaaatatggttga |
36135400 |
T |
|
| Q |
218 |
aaatcacaacttcccataataatatattacctcctccnnnnnnncaaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaatttttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135399 |
aaatcacaacttcccataataatatattacctcctcc-aaaaaacaaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaatttttc |
36135301 |
T |
|
| Q |
318 |
aaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgagcaatatttttatcaattacttaaacaacttttgtatt |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
36135300 |
aaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgagaaatacttttatcaattacttaaacaacttttatatt |
36135201 |
T |
|
| Q |
418 |
tggac--------------tatatacacacacattattttctctttatctttgtttccattatattattaacatatcacatttatcacatcactctatct |
503 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135200 |
tggacactcataaattctatatatacacacacattattttctctttatctttgtttccattatattattaacatatcacatttatcacatcactctatct |
36135101 |
T |
|
| Q |
504 |
atttttcttctctct |
518 |
Q |
| |
|
||||||||||||||| |
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| T |
36135100 |
atttttcttctctct |
36135086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 41337031 - 41336660
Alignment:
| Q |
18 |
aaatatgtagaggactaaaatttccaacacataagttgaaaagagtccgctcttagaacccaagagacgactctcatggtaacaccaagcttttatcaat |
117 |
Q |
| |
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||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41337031 |
aaataagtataggactaaaatttccaacgcataagttgaaaagagtccactcttagaacccaagagacgactctcatggtaacaccaagcttttatcaat |
41336932 |
T |
|
| Q |
118 |
ataacaatgcgcttgaatatatgattccgacttatcaaatgatcaacttgaaataaccaaatatttttaagagattttgcaaaataa-aaaatatggttg |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||| || ||||| | | ||||||| |||||| ||||||||||| |||||||| ||| |
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| T |
41336931 |
ataacactgcgcttgaatatatgattccgacttatcaaataatcaacctgcaataatcgattattttttagagatcttgcaaaataaaaaaatatgcttg |
41336832 |
T |
|
| Q |
217 |
aaaatcacaacttcccataataatatattacctcctccnnnnnnncaaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaattttt |
316 |
Q |
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|||||||||||| | ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41336831 |
-aaatcacaacttactataataa-atattacctcgtcc-aaaaaacaaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaattttt |
41336735 |
T |
|
| Q |
317 |
caaccaaacacttaatgatcttcacttgccattgaacaagaagaagaaacacgcgaaggttgagcaatatttttatca |
394 |
Q |
| |
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||||||| ||||||||||||||||| || |||||||| || || ||||||||||||||||| ||||||||||||| |
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|
| T |
41336734 |
caaccaagcacttaatgatcttcacctggcattgaac---aacaaaaaacacgcgaaggttgaaaaatatttttatca |
41336660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 10136077 - 10136129
Alignment:
| Q |
91 |
tcatggtaacaccaagcttttatcaatataacaatgcgcttgaatatatgatt |
143 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
10136077 |
tcatagtaacaccaagcttttatcaatataatgctacgcttgaataaatgatt |
10136129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 495
Target Start/End: Complemental strand, 6463213 - 6463169
Alignment:
| Q |
451 |
tctttgtttccattatattattaacatatcacatttatcacatca |
495 |
Q |
| |
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||||| || |||||| || |||||||||||||||||||||||||| |
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| T |
6463213 |
tcttttttcccattacatcattaacatatcacatttatcacatca |
6463169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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