View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11138_high_1 (Length: 537)

Name: NF11138_high_1
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11138_high_1
NF11138_high_1
[»] chr7 (7 HSPs)
chr7 (62-408)||(14241108-14241453)
chr7 (424-494)||(14241439-14241513)
chr7 (130-329)||(17263274-17263468)
chr7 (236-326)||(42453622-42453712)
chr7 (237-326)||(6459080-6459168)
chr7 (237-326)||(41242166-41242255)
chr7 (130-177)||(43656000-43656047)
[»] scaffold0074 (1 HSPs)
scaffold0074 (130-326)||(36045-36241)
[»] chr4 (8 HSPs)
chr4 (172-326)||(28740752-28740906)
chr4 (210-326)||(13159702-13159818)
chr4 (236-326)||(46191198-46191288)
chr4 (235-326)||(20177381-20177472)
chr4 (235-326)||(44546611-44546702)
chr4 (131-188)||(22322554-22322611)
chr4 (130-170)||(1463213-1463253)
chr4 (131-167)||(37014074-37014110)
[»] chr8 (2 HSPs)
chr8 (130-326)||(15172688-15172889)
chr8 (235-326)||(17936325-17936416)
[»] chr1 (5 HSPs)
chr1 (235-326)||(10349520-10349611)
chr1 (235-326)||(39581404-39581496)
chr1 (130-170)||(8303913-8303953)
chr1 (276-326)||(20819606-20819656)
chr1 (130-167)||(33567311-33567348)
[»] chr5 (3 HSPs)
chr5 (130-326)||(23257044-23257239)
chr5 (235-326)||(37268316-37268407)
chr5 (254-326)||(26397289-26397361)
[»] chr2 (6 HSPs)
chr2 (224-326)||(17607624-17607726)
chr2 (237-326)||(45701191-45701280)
chr2 (222-326)||(12915728-12915832)
chr2 (239-326)||(2220100-2220187)
chr2 (130-195)||(22858803-22858868)
chr2 (130-162)||(26404873-26404905)
[»] chr6 (5 HSPs)
chr6 (130-326)||(14781986-14782183)
chr6 (236-326)||(25186766-25186856)
chr6 (131-180)||(9756363-9756412)
chr6 (131-188)||(31848191-31848248)
chr6 (130-177)||(29361530-29361577)
[»] chr3 (4 HSPs)
chr3 (222-326)||(7638888-7638992)
chr3 (239-314)||(30188542-30188617)
chr3 (236-269)||(7676830-7676863)
chr3 (131-177)||(19667633-19667679)
[»] scaffold1251 (1 HSPs)
scaffold1251 (276-329)||(858-911)
[»] scaffold0461 (2 HSPs)
scaffold0461 (130-167)||(2082-2119)
scaffold0461 (130-167)||(9018-9055)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 62 - 408
Target Start/End: Original strand, 14241108 - 14241453
Alignment:
Q  62 gtgaatttcaggtaataaaattagggtgaattagttaaagaggaaccatacttttagaaggaaataaattttggttttcatgatcggtggagacacccac 161  Q
    ||||||||| || |||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||| |||||||||| ||||    
T  14241108 gtgaatttcgggaaataaaattagggtgaattagttaaagaggaaccgtacttaaggaaggaaataaattttggttttcatgattggtggagacatccac 14241207  T
Q  162 tcctttatacgggtgttatataattttgttatttctttttcggtggcagcaacctcttattaggtgccatgactttgtaacagatattgtgtgattcatc 261  Q
    |  ||| || | |||  || ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14241208 ttttttgtatgagtgc-atgtaattttgttatttctttttcggtggtggcaacctcttattaggtgtcatgactttgtaacagatattgtgtgattcatc 14241306  T
Q  262 acttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgatttattnnnnnnnnnccataaactttgaggagggaatg 361  Q
    |||||||||  || |||||| ||||||||| |||||||||||||||||||||||||||||||||||||         |||||||| ||||||||||||||    
T  14241307 acttttagcacatcttgtgcggggtgaatcacttttcgttttagcaatatatttcattttgatttattaaaaaaaaaccataaaccttgaggagggaatg 14241406  T
Q  362 gtaaaatagattaatatattcaagtatgcatagatttcttaacgatt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14241407 gtaaaatagattaatatattcaagtatgcatagatttcttaacgatt 14241453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 14241439 - 14241513
Alignment:
Q  424 gatttcttaacgattcttcggaatttcgagttattgagttgca----tatgtatttttcttagtaatatttgtgt 494  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  14241439 gatttcttaacgattcttcggaatttcgagttattgagttgcatatgtatgtatttttcttagtaatatttgtgt 14241513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 329
Target Start/End: Original strand, 17263274 - 17263468
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgttatataattttgttatttctttttcggtggcagcaacctcttattaggtgcc 229  Q
    ||||||||| |||||| |||||||||||||||||||||||| || ||| || |||||||   |||| ||   || |||| |||  ||||| ||||| | |    
T  17263274 ttttggtttccatgattggtggagacacccactcctttatatggatgtcatgtaatttt---attt-ttggccgatggcggcactctctttttaggggtc 17263369  T
Q  230 atgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgatttatt 329  Q
     || | ||||||||||||||| |||||||||| ||||||||  |  |||| ||||||||||| ||||||| || | ||||||||| ||||||||||||||    
T  17263370 gtgtccttgtaacagatattgggtgattcatctcttttagcacaccttgtacagggtgaatcacttttcg-ttgaacaatatattccattttgatttatt 17263468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 42453622 - 42453712
Alignment:
Q  236 ttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||||||||||||| ||||||||||||||||||  |  || ||| ||||||||| || ||||||| ||||||||||| |||||| ||||    
T  42453622 ttgtaacagatattgtatgattcatcacttttagcacaccttatgcggggtgaatcactgttcgtttgagcaatatattccatttttattt 42453712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 6459080 - 6459168
Alignment:
Q  237 tgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||| |||| |||| |||||||||| ||||||||  |  |||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  6459080 tgtatcagacattgagtgattcatcgcttttagcacac-ttgtgcagggtgaatcacttttcttttgagcaatatatttcattttgattt 6459168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 41242255 - 41242166
Alignment:
Q  237 tgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    ||||||||||||   ||||||||||| |||||||  |  |||||| ||||||||| |||||||||| || |||||||| |||||||||||    
T  41242255 tgtaacagatatctagtgattcatcaattttagcacaccttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgattt 41242166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 43656000 - 43656047
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgt 177  Q
    |||||||||||||||| |||||||||| |||||||||| || ||||||    
T  43656000 ttttggttttcatgattggtggagacatccactcctttgtatgggtgt 43656047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 130 - 326
Target Start/End: Complemental strand, 36241 - 36045
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgttatataattttgttatttctttttcggtggcagcaacctcttattaggtgcc 229  Q
    |||||||||||||||| ||||||||||| ||||||||| || |||||| || |||||||||||||||||||| ||| || ||||| ||||  | ||||||    
T  36241 ttttggttttcatgattggtggagacactcactcctttgtatgggtgtcatgtaattttgttatttcttttttggtcgcggcaacatcttgctcggtgcc 36142  T
Q  230 atgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||||||||||||||||| ||||||||||||||||||||  || |||||| || |||||    |||| |||  |||||||||| |||||||||||    
T  36141 atgactttgtaacagatattttgtgattcatcacttttagcacatcttgtgcgggatgaatgatatttcatttgggcaatatattccattttgattt 36045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 172 - 326
Target Start/End: Original strand, 28740752 - 28740906
Alignment:
Q  172 gggtgttatataattttgttatttctttttcggtggcagcaacctcttattaggtgccatgactttgtaacagatattgtgtgattcatcacttttagcg 271  Q
    |||||| || ||| |||||||||||||||| |||||| ||||||| || ||||||| | ||||||||||||||||||| ||||| ||||||||||| ||     
T  28740752 gggtgtcatgtaagtttgttatttcttttttggtggcggcaaccttttgttaggtgtcttgactttgtaacagatattatgtgaatcatcacttttggca 28740851  T
Q  272 tatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
     || |||||| ||||||||| | |||  |||   ||||||||| |||||||||||    
T  28740852 catcttgtgctgggtgaatcaccttttatttagacaatatattccattttgattt 28740906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 210 - 326
Target Start/End: Complemental strand, 13159818 - 13159702
Alignment:
Q  210 gcaacctcttattaggtgccatgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaat 309  Q
    ||||||| || ||||||||  ||  ||||||||| ||||| ||||||||| ||||||||||  |  |||||| ||||||||| |||||||||| ||||||    
T  13159818 gcaacctattgttaggtgctttgtatttgtaacatatattttgtgattcaccacttttagcacactttgtgcggggtgaatcacttttcgtttgagcaat 13159719  T
Q  310 atatttcattttgattt 326  Q
    ||||| |||||||||||    
T  13159718 atattccattttgattt 13159702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 46191288 - 46191198
Alignment:
Q  236 ttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    ||||||||||||||  |||| |||||| |||||||  | ||||||| ||||||||| |||||||||| ||||||||||| |||||||||||    
T  46191288 ttgtaacagatattcagtgagtcatcatttttagcacacattgtgcggggtgaatcacttttcgtttgagcaatatattccattttgattt 46191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 20177472 - 20177381
Alignment:
Q  235 tttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||| |||||||| |||||||||||||||||| | ||| ||||||  |||||||| ||||||| || |||||||||||  ||||||||||    
T  20177472 tttgtatcagatattatgtgattcatcacttttaacatatcttgtgcgaggtgaatcacttttcgattgagcaatatattcgattttgattt 20177381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 44546611 - 44546702
Alignment:
Q  235 tttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||||||||  ||| ||||||| || ||||||||  |  |||||| ||||||||| |||||| ||| ||||||||||| |||||||||||    
T  44546611 tttgtaacagactttgagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgattt 44546702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 22322611 - 22322554
Alignment:
Q  131 tttggttttcatgatcggtggagacacccactcctttatacgggtgttatataatttt 188  Q
    ||||||||||| ||| ||||||||||||||||||||| || |||| | || |||||||    
T  22322611 tttggttttcacgattggtggagacacccactcctttgtatgggtatcatgtaatttt 22322554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 1463213 - 1463253
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttata 170  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  1463213 ttttggttttcatgattggtggcgacacccacttctttata 1463253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 37014110 - 37014074
Alignment:
Q  131 tttggttttcatgatcggtggagacacccactccttt 167  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  37014110 tttggttttcatgattggtggagacacccacttcttt 37014074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 326
Target Start/End: Original strand, 15172688 - 15172889
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgttatataattttg------ttatttctttttcggtggcagcaacctcttatta 223  Q
    ||||| |||||| ||| | ||||||||||||||||||| || |||||| || |||||||       || ||| |||||  | | |||||| ||||| |||    
T  15172688 ttttgtttttcacgattgatggagacacccactcctttgtatgggtgtcatgtaattttcattgttttttttttttttttgcgccagcaaactctt-tta 15172786  T
Q  224 ggtgccatgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttga 323  Q
    |||||| || || ||||||||||||| ||||||||||||||||||||  ||||||| | ||||||||| || ||||||| || |||||||| |||||| |    
T  15172787 ggtgccttgtctatgtaacagatattatgtgattcatcacttttagcacatattgttcggggtgaatcactcttcgtttgagaaatatattccattttaa 15172886  T
Q  324 ttt 326  Q
    |||    
T  15172887 ttt 15172889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 17936325 - 17936416
Alignment:
Q  235 tttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||||||||  ||| ||||||| || ||||||||  |  |||||| ||||||||| |||||| ||| |||||||||||||||||||||||    
T  17936325 tttgtaacagactttgagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgattt 17936416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 10349520 - 10349611
Alignment:
Q  235 tttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    ||||||||||||||| ||||||||||||||||||||  |  |||||||||||||||| ||||  |||| ||||||||||| |||||||||||    
T  10349520 tttgtaacagatattttgtgattcatcacttttagcacaccttgtgcagggtgaatcactttcagtttgagcaatatattccattttgattt 10349611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 39581404 - 39581496
Alignment:
Q  235 tttgtaacagatattgtgtgatt-catcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||| |||||||| ||||||| ||||||||||||| ||| |||||| ||||||||| || ||||||| | ||||||||   ||||||||||    
T  39581404 tttgtatcagatattttgtgatttcatcacttttagcatatcttgtgcggggtgaatcactattcgtttgaacaatatatcctattttgattt 39581496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 8303953 - 8303913
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttata 170  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  8303953 ttttggttttcatgattggtggagacatccactcctttata 8303913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 20819656 - 20819606
Alignment:
Q  276 ttgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||| ||||||||| |||||| ||| ||||||||||| |||||||||||    
T  20819656 ttgtgctgggtgaatcacttttcttttgagcaatatattccattttgattt 20819606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 33567348 - 33567311
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactccttt 167  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  33567348 ttttggttttcatgattggtggagacatccactccttt 33567311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 130 - 326
Target Start/End: Original strand, 23257044 - 23257239
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgttatataattttgttatttctttttcggtggcagcaacctcttattaggtgcc 229  Q
    ||||| |||||||||| |||||||||||||||| || | || |||||| || ||||||| || ||| ||||| |||||  ||| ||| |  || ||||||    
T  23257044 ttttgattttcatgattggtggagacacccacttctgtgtatgggtgtcatgtaattttctt-tttattttttggtggtggcatcctttggtttggtgcc 23257142  T
Q  230 atgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
     ||  | |||| ||||||||| ||||||||||  |||||||  |  |||||| ||||||||| |||||||||| | ||||||||| |||||||||||    
T  23257143 ttgtttgtgtagcagatattgggtgattcatcggttttagcacaccttgtgcggggtgaatcacttttcgtttgaacaatatattccattttgattt 23257239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 37268316 - 37268407
Alignment:
Q  235 tttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||||||||||  ||| ||||||| |||||||||||  |  |||| | ||||||||| |||||| ||| ||||||||||| |||||||||||    
T  37268316 tttgtaacagactttgagtgattcgtcacttttagcacaccttgtacggggtgaatcacttttcctttgagcaatatattccattttgattt 37268407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 26397361 - 26397289
Alignment:
Q  254 gattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    ||||||||| |||||||  |  |||||| ||||||||| || ||| ||| ||||||||||| |||||||||||    
T  26397361 gattcatcatttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgattt 26397289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 17607624 - 17607726
Alignment:
Q  224 ggtgccatgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttga 323  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |  |  ||||||  |||||||| || | ||||| ||||||||||| |||||| |    
T  17607624 ggtgccatgatcttgtaacagatattgtgtgattcatcacttttaacacaccttgtgcgaggtgaatcactgtccgtttgagcaatatattccattttta 17607723  T
Q  324 ttt 326  Q
    |||    
T  17607724 ttt 17607726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 45701280 - 45701191
Alignment:
Q  237 tgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    ||||||||| |||| |||||||||| ||||||||  |  |||||| ||||||||| |||||| ||| ||||||||||| |||||||||||    
T  45701280 tgtaacagacattgagtgattcatcgcttttagcacaccttgtgctgggtgaatcacttttcttttaagcaatatattccattttgattt 45701191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 12915728 - 12915832
Alignment:
Q  222 taggtgccatgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcatttt 321  Q
    |||||||| || ||||||| ||||| ||| ||||||||||| ||||| |  |  |||||  ||||||||| ||| |||||| ||||||||||||||||||    
T  12915728 taggtgccttgtctttgtatcagattttgcgtgattcatcagttttaacacaccttgtgtggggtgaatcacttctcgtttgagcaatatatttcatttt 12915827  T
Q  322 gattt 326  Q
    |||||    
T  12915828 gattt 12915832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 2220187 - 2220100
Alignment:
Q  239 taacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |||| |||||| ||||||||||||||||||||  || ||||    |||||||| |||||||||| ||||||||| | |||||||||||    
T  2220187 taacggatattatgtgattcatcacttttagcacatcttgtatgaggtgaatcacttttcgtttgagcaatataatccattttgattt 2220100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 22858868 - 22858803
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgttatataattttgttattt 195  Q
    |||||||||||||||| |||||||||||||| | ||||||| |  ||| || ||||||| ||||||    
T  22858868 ttttggttttcatgattggtggagacacccattactttatatgaatgtcatgtaattttattattt 22858803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 26404873 - 26404905
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccact 162  Q
    |||||||||||||||| ||||||||||||||||    
T  26404873 ttttggttttcatgattggtggagacacccact 26404905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 326
Target Start/End: Complemental strand, 14782183 - 14781986
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgttatataattttgttatttcttt-ttcggtggcagcaacctcttattaggtgc 228  Q
    |||||| || |||||| ||||| ||||||||||||||| || |||||| || ||||||  || ||| ||| ||||||||  ||| ||| ||  ||| |||    
T  14782183 ttttggcttgcatgattggtggtgacacccactcctttgtatgggtgtcatgtaatttgattttttttttgttcggtggtggcatccttttcatagatgc 14782084  T
Q  229 catgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    |  ||||||||||||||  ||| |||||||| ||||||||||  |  |||||  ||||||||| ||  || ||| ||||||||||| |||||||||||    
T  14782083 ctggactttgtaacagactttgggtgattcaccacttttagcacaccttgtgtggggtgaatctctcctcttttgagcaatatattccattttgattt 14781986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 25186856 - 25186766
Alignment:
Q  236 ttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcattttgattt 326  Q
    ||||||||||||||||| |||||||||||||||||     |||||| ||||||||  ||  |||||| ||||||||||| |||||| ||||    
T  25186856 ttgtaacagatattgtgcgattcatcacttttagcacgccttgtgcggggtgaattactgatcgtttgagcaatatattccatttttattt 25186766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 9756363 - 9756412
Alignment:
Q  131 tttggttttcatgatcggtggagacacccactcctttatacgggtgttat 180  Q
    |||||| |||||||| ||||||||||||||||||||| || |||||||||    
T  9756363 tttggtcttcatgattggtggagacacccactcctttgtaggggtgttat 9756412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 31848248 - 31848191
Alignment:
Q  131 tttggttttcatgatcggtggagacacccactcctttatacgggtgttatataatttt 188  Q
    ||||||||||||||| ||||||||||| ||||||||| || |||||| || |||||||    
T  31848248 tttggttttcatgattggtggagacactcactcctttgtatgggtgtcatgtaatttt 31848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 29361530 - 29361577
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactcctttatacgggtgt 177  Q
    |||||||||||| ||| ||||||||||||||||||||| || ||||||    
T  29361530 ttttggttttcacgattggtggagacacccactcctttgtatgggtgt 29361577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 7638992 - 7638888
Alignment:
Q  222 taggtgccatgactttgtaacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatttcatttt 321  Q
    |||||||| ||  ||||||||||||||   ||||||||||||||||||   |  || ||| ||||||||| |||||||||| || |||||||| ||||||    
T  7638992 taggtgccttgtgtttgtaacagatatctagtgattcatcacttttagtacaccttatgcggggtgaatcacttttcgtttgagtaatatattccatttt 7638893  T
Q  322 gattt 326  Q
    |||||    
T  7638892 gattt 7638888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 314
Target Start/End: Original strand, 30188542 - 30188617
Alignment:
Q  239 taacagatattgtgtgattcatcacttttagcgtatattgtgcagggtgaatcccttttcgttttagcaatatatt 314  Q
    |||||||| ||||||||||||||||| |||||  || | |||| ||||||||| | |||||||| |||||||||||    
T  30188542 taacagattttgtgtgattcatcactcttagcacatctagtgcggggtgaatcacctttcgtttgagcaatatatt 30188617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 7676863 - 7676830
Alignment:
Q  236 ttgtaacagatattgtgtgattcatcacttttag 269  Q
    ||||||||||||||||||||||||||||||||||    
T  7676863 ttgtaacagatattgtgtgattcatcacttttag 7676830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 19667679 - 19667633
Alignment:
Q  131 tttggttttcatgatcggtggagacacccactcctttatacgggtgt 177  Q
    ||||| ||||||||| ||||||||||||||||||||| || ||||||    
T  19667679 tttggctttcatgattggtggagacacccactcctttgtatgggtgt 19667633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 911 - 858
Alignment:
Q  276 ttgtgcagggtgaatcccttttcgttttagcaatatatttcattttgatttatt 329  Q
    |||||| ||||||||| |||||| ||| ||||||||||| ||||||||||||||    
T  911 ttgtgcggggtgaatcacttttcatttgagcaatatattccattttgatttatt 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 2082 - 2119
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactccttt 167  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  2082 ttttggttttcatgattggtggtgacacccactccttt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 9018 - 9055
Alignment:
Q  130 ttttggttttcatgatcggtggagacacccactccttt 167  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  9018 ttttggttttcatgattggtggtgacacccactccttt 9055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University