View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11138_high_11 (Length: 237)
Name: NF11138_high_11
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11138_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15891887 - 15891665
Alignment:
| Q |
1 |
tttgaagagtttgctttcccattcaatggcaagaagccttgttcaacttaaaaaactaacagttggttattgtgacatgatggaagagataattacaaag |
100 |
Q |
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| T |
15891887 |
tttgaagagtttgctttcccattcaatggcaagaagccttgttcaacttaaaaaactaacagttggttattgtgacatgatggaagagataattacaaag |
15891788 |
T |
|
| Q |
101 |
gacgaccggaatagtgaaggacgaaacaaagtcaagattttatttcctaaattggaggaattgatccttggtccccttcctaacttggaatgtgtttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15891787 |
gacgaccggaatagtgaaggacgaaacaaagtcaagattttatttcctaaattggaggaattgatccttggtccccttcctaacttggaatgtgtttgtt |
15891688 |
T |
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| Q |
201 |
cgggagattatgactatgatgtc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
15891687 |
cgggagattatgactatgatgtc |
15891665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 133939 - 134034
Alignment:
| Q |
125 |
aacaaagtcaagattttatttcctaaattggaggaattgatccttggtccccttcctaacttggaatgtgtttgttcgggagattatgactatgat |
220 |
Q |
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| T |
133939 |
aacaaaatcaagactttatttcctaagttggaggtattgaaactttgtgatcttcctatgttggaatgtgtttgttcaggagattatgactatgat |
134034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34376328 - 34376547
Alignment:
| Q |
1 |
tttgaagagtttgctttcccattcaatggcaagaagccttgttcaacttaaaaaactaacagttggttattgtgacatgatggaagagataattacaaag |
100 |
Q |
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| T |
34376328 |
tttgaagagtttgttctcccactctatgggtagaagccttgtgcaacttcaagaaatatcagtttgggattgtgaaatgatggaggagataataacaaag |
34376427 |
T |
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| Q |
101 |
gacgaccggaatagtgaaggacgaaacaaagtcaagattttatttcctaaattggaggaattgatccttggtccccttcctaacttggaatgtgtttgtt |
200 |
Q |
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|| || ||| |||||| | || ||||||| || ||||||||||| ||||||| |||| |||| |||||||| || |||||||||||| |
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| T |
34376428 |
gaagaggaatatatagaaggaggcaataaagtcaggacattatttcctaagttggaggtattgtcacttgcatatcttcctaagctgaaatgtgtttgtt |
34376527 |
T |
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| Q |
201 |
cgggagattatgactatgat |
220 |
Q |
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| T |
34376528 |
caggagattatgactatgat |
34376547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34551067 - 34550848
Alignment:
| Q |
1 |
tttgaagagtttgctttcccattcaatggcaagaagccttgttcaacttaaaaaactaacagttggttattgtgacatgatggaagagataattacaaag |
100 |
Q |
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||||| ||||||||| |||||||| ||||| ||||||||||| |||||| ||||| || ||||| | |||| || ||||| |||||||| |||| |
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| T |
34551067 |
tttgaggagtttgctctcccattctatggctagaagccttgtgcaacttcaaaaaatagtagttgttagatgtggaatcatggaggagataataacaata |
34550968 |
T |
|
| Q |
101 |
gacgaccggaa--tagtgaaggacgaaacaaagtcaagattttatttcctaaattggaggaattgatccttggtccccttcctaacttggaatgtgtttg |
198 |
Q |
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|| | |||| || |||||| | ||||||||||||| |||||||||| | ||||||||||||| ||| ||||||| ||| |||||||||| |
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| T |
34550967 |
ga--aggggaatctatagaaggaggcaacaaagtcaagactttatttccttagttggaggaattgacacttttaaatcttcctatgttgaaatgtgtttg |
34550870 |
T |
|
| Q |
199 |
ttcgggagattatgactatgat |
220 |
Q |
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||| |||||||||||||||||| |
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| T |
34550869 |
ttcaggagattatgactatgat |
34550848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34562793 - 34562574
Alignment:
| Q |
1 |
tttgaagagtttgctttcccattcaatggcaagaagccttgttcaacttaaaaaactaacagttggttattgtgacatgatggaagagataattacaaag |
100 |
Q |
| |
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||||| ||||||||| ||||| |||||||| ||||||||||| |||||| ||||| || ||||| ||||||| |||||||| || ||||| |||| | |
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| T |
34562793 |
tttgaggagtttgctctcccactcaatggctagaagccttgtgcaacttcaaaaaatagtagttgaggattgtgaaatgatggaggatataataacaatg |
34562694 |
T |
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| Q |
101 |
gacgaccggaa--tagtgaaggacgaaacaaagtcaagattttatttcctaaattggaggaattgatccttggtccccttcctaacttggaatgtgtttg |
198 |
Q |
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|| | |||| || ||||| | ||||||||||||| ||||||||||| |||||| ||||| |||| | |||||||| || ||||| | || |
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| T |
34562693 |
ga--aggggaatctataaaaggaggcaacaaagtcaagacattatttcctaagttggagttattgacacttgaatctcttcctaagctgaaatgtatctg |
34562596 |
T |
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| Q |
199 |
ttcgggagattatgactatgat |
220 |
Q |
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||| |||||||||||||||||| |
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| T |
34562595 |
ttcaggagattatgactatgat |
34562574 |
T |
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