View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11138_high_8 (Length: 307)
Name: NF11138_high_8
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11138_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 42687455 - 42687172
Alignment:
| Q |
17 |
aactttttatagatacactcaatcaaatcacagtatcacactataacatcactttgttacgtttgttactaaaaattgaactaacctttccttgttggat |
116 |
Q |
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| T |
42687455 |
aactttttatagatacactcaatcaaatcacagtatcacactataacatcactttgttacgtttgttactaaaaattgaactaacctttccttgttggat |
42687356 |
T |
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| Q |
117 |
atcgacctgtccttcccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcatt |
216 |
Q |
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| T |
42687355 |
atcgacctgtccttcccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaaaactttcaccgtgatctggattgcctaaatcatt |
42687256 |
T |
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| Q |
217 |
gtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctct |
300 |
Q |
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| T |
42687255 |
gtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctct |
42687172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 42694313 - 42694485
Alignment:
| Q |
128 |
cttcccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgtagacatcgt |
227 |
Q |
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| T |
42694313 |
cttccccgacgaggataaggatatgtgtcagacccgccaagaacaggacgagcatgattgtcacctttctccggatttcctaaatcattgtagacatcat |
42694412 |
T |
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| Q |
228 |
aatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctct |
300 |
Q |
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| T |
42694413 |
aatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctct |
42694485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 6290507 - 6290597
Alignment:
| Q |
206 |
cctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttctt |
296 |
Q |
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| T |
6290507 |
cctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttctt |
6290597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 6425292 - 6425363
Alignment:
| Q |
209 |
aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaa |
280 |
Q |
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| T |
6425292 |
aaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaa |
6425363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 6353602 - 6353689
Alignment:
| Q |
209 |
aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttctt |
296 |
Q |
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| T |
6353602 |
aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt |
6353689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 6322622 - 6322710
Alignment:
| Q |
212 |
tcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctct |
300 |
Q |
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| T |
6322622 |
tcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttctct |
6322710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 9603247 - 9603196
Alignment:
| Q |
132 |
ccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaag |
183 |
Q |
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| T |
9603247 |
cccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaag |
9603196 |
T |
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