View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11138_low_11 (Length: 251)
Name: NF11138_low_11
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11138_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 43947919 - 43948140
Alignment:
| Q |
16 |
acttttatcacaaaattattgattttggaatgcatcttgtcaattttttaatatttcatgttatgttaatatttgtttgcttcgttttttatacctcttt |
115 |
Q |
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| T |
43947919 |
acttttatcacaaaattattgattgtggaatgcatcttgtcaattttttaatatttcatgttatgttaatatttgtttgcttcgttttttatacctcttt |
43948018 |
T |
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| Q |
116 |
gtaaacttttgatttgaatgatttcagagtgataattgatagtaatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgc |
215 |
Q |
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| T |
43948019 |
gtaaacttttgatttgaatgatttcagagtgataattga---taatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgc |
43948115 |
T |
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| Q |
216 |
caacctaacttagcagtttcttcat |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
43948116 |
caacctaacttagcagtttcttcat |
43948140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 36612178 - 36612073
Alignment:
| Q |
127 |
atttgaatgatttcagagtgataattgatagta--atgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
224 |
Q |
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| T |
36612178 |
atttgaatgatttcacggtgaaaattgataattttatgtttttggaatttaggatgatagatcatcaaatgaagataaggtggagaattgccaacctaac |
36612079 |
T |
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| Q |
225 |
ttagca |
230 |
Q |
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||||| |
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| T |
36612078 |
gtagca |
36612073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 36664064 - 36664012
Alignment:
| Q |
172 |
tttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
224 |
Q |
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| T |
36664064 |
tttaggatgataaatcatcaaatgaagatgaggtggagaagcgccaacctaac |
36664012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 36632031 - 36632092
Alignment:
| Q |
163 |
tttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
224 |
Q |
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||||| || |||||| ||| |||||||||||||||||| || |||||||| |||||||||| |
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| T |
36632031 |
ttttttgcctttagggtgataaatcatcaaatgaagataaggtggagaagcaccaacctaac |
36632092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 19656769 - 19656673
Alignment:
| Q |
130 |
tgaatgatttcagagtgataattgata--gtaatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
224 |
Q |
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|||||||||||| ||||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||| || |||||||||||||| ||||| |
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| T |
19656769 |
tgaatgatttcacagtgacaattgataatgttatgtttttgttatttaggatgataaatcatcaaatgaagataaggtggagaagtgccaaactaac |
19656673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 19673705 - 19673609
Alignment:
| Q |
130 |
tgaatgatttcagagtgataattgata--gtaatgtttttggcatttaggatgacaaatcatcaaatgaagatcagctggagaagtgccaacctaac |
224 |
Q |
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|||||||||||| |||| |||||||| || ||||||||| ||||||||||| ||||| || ||||||||| || |||||||||||||| ||||| |
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| T |
19673705 |
tgaatgatttcacggtgacaattgataatgttatgtttttgttatttaggatgataaatcgtcgaatgaagataaggtggagaagtgccaaactaac |
19673609 |
T |
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