View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11138_low_2 (Length: 485)
Name: NF11138_low_2
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11138_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 99 - 485
Target Start/End: Complemental strand, 8756682 - 8756296
Alignment:
| Q |
99 |
tgtcacgctatagggaatgctacttctttggctaacagctaccattcccaacctaagtccttgtgatccattgaatatgagctgcaactctcccacaata |
198 |
Q |
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| T |
8756682 |
tgtcacgctatagggaatgctacttctttggctaacagctaccattcccaacctaagtccttgtgatccattgaatatgagctgcaactctcccacaata |
8756583 |
T |
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| Q |
199 |
tcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagaca |
298 |
Q |
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| T |
8756582 |
tcacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagaca |
8756483 |
T |
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| Q |
299 |
aggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattca |
398 |
Q |
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| T |
8756482 |
aggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcgtacattca |
8756383 |
T |
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| Q |
399 |
agaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttcttctctgcttctccact |
485 |
Q |
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| T |
8756382 |
agaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttgttcttagcttcttcact |
8756296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 100 - 470
Target Start/End: Complemental strand, 8749130 - 8748760
Alignment:
| Q |
100 |
gtcacgctatagggaatgctacttctttggctaacagctaccattcccaacctaagtccttgtgatccattgaatatgagctgcaactctcccacaatat |
199 |
Q |
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| T |
8749130 |
gtcacactatagggaatgctacttttttggctaacagctatgattccaaacctaagtccttgtgatcaattcactatgagctgcaactctccgacaacat |
8749031 |
T |
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| Q |
200 |
cacaacttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagacaa |
299 |
Q |
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| T |
8749030 |
cacaacttgctttcttatactcttctctatgcctaatcgccattggagctggtggtgtaagagcttcttccttaccctttggcattgaccaactagacaa |
8748931 |
T |
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| Q |
300 |
ggaaaaagatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattcaa |
399 |
Q |
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| T |
8748930 |
ggaaaaagatgcaggaatcatagagggctactttaattggacctatgctttagcaacagctgcagttttaattggaacgaccattttggcatatattcaa |
8748831 |
T |
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| Q |
400 |
gaaaattttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttctt |
470 |
Q |
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| T |
8748830 |
gaaaattttggttggattgttggatttggtttacctgttgtgttcatgttcatatctatggtatctttctt |
8748760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 106 - 470
Target Start/End: Complemental strand, 8766694 - 8766330
Alignment:
| Q |
106 |
ctatagggaatgctacttctttggctaacagctaccattcccaacctaagtccttgtgatccattgaatatgagctgcaactctcccacaatatcacaac |
205 |
Q |
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| T |
8766694 |
ctatagggaatgctacttttttggctaacaactatgattccaaacctaagtccttgtgatcctatcactatgagctgcaactctcccacaacatcacagc |
8766595 |
T |
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| Q |
206 |
ttgctttcttatactcttctctatgcctaatctccattggagctggtggtgtaagagcctcttccttagcctttggcattgaccaactagacaaggaaaa |
305 |
Q |
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| T |
8766594 |
ttgctttcttatactcttctctatgcttaatctccattggagctggtggtgtaagagcttcctctttagcctttggcattgatcaactaaacaaggaaaa |
8766495 |
T |
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| Q |
306 |
agatgcaggaatcatagagggctactttaattggagctatgctttaacagcagctgcagttttaattggaacgaccatcttggcatacattcaagaaaat |
405 |
Q |
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| T |
8766494 |
agatgcaggaatcatagagggctactttaattggacctatgctttaacagcagctgcagtcctaactggaatgaccgttttggcatatattcaagaaatt |
8766395 |
T |
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| Q |
406 |
tttggttggattattggatttggtgtccctgttgtcttcatgttcatatctatggtgtctttctt |
470 |
Q |
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| T |
8766394 |
tttggttggatggttggatttggtgtacctgttgtgttcatgttcatatctatggtgtctttctt |
8766330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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