View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11138_low_3 (Length: 483)
Name: NF11138_low_3
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11138_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Complemental strand, 1630395 - 1629944
Alignment:
| Q |
20 |
taaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630395 |
taaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
1630296 |
T |
|
| Q |
120 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1630295 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccata |
1630196 |
T |
|
| Q |
220 |
ataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcctttaatctctttttattttatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630195 |
ataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcctttaatctctttttattttatc |
1630096 |
T |
|
| Q |
320 |
atttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttctta----catacaattactttaattttttatttta |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
1630095 |
atttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatgcatacaattactttcattttttatttta |
1629996 |
T |
|
| Q |
416 |
aataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629995 |
aataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
1629944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 1624420 - 1624142
Alignment:
| Q |
20 |
taaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624420 |
taaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
1624321 |
T |
|
| Q |
120 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1624320 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccata |
1624221 |
T |
|
| Q |
220 |
ataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
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|
| T |
1624220 |
ataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1624142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 1607399 - 1607121
Alignment:
| Q |
20 |
taaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607399 |
taaagtacaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaggctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
1607300 |
T |
|
| Q |
120 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1607299 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatgggatgcaaaataccata |
1607200 |
T |
|
| Q |
220 |
ataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctcct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
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|
| T |
1607199 |
ataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattatatttcatttcct |
1607121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 10819886 - 10820160
Alignment:
| Q |
22 |
aagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtttg |
121 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
10819886 |
aagttcaatcttgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatacaagacaaggtatg |
10819985 |
T |
|
| Q |
122 |
tgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccataat |
221 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||| |||||||| |||||||||||||| || |
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|
| T |
10819986 |
tgatacatgtgaagaaaggtgtttataaagagaacattgaggttgctgttcataatgataacattatgttggtcggtgatggaatgcaaaataccatcat |
10820085 |
T |
|
| Q |
222 |
aacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttatattccatctc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10820086 |
aacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagccggtgagttatattccatctc |
10820160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 307 - 467
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
307 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
406 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
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|
| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
|
| Q |
407 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 424 - 467
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
424 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 18785446 - 18785179
Alignment:
| Q |
20 |
taaagtacaatcttgtggtggcaaaagatggttctggtcagtacaagactgtgcaagctgctttaaatgctgctgctaagagaaaatataagacaaggtt |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785446 |
taaagtacaatattgtggtggcaaaagatggttctggacagtacaagactgtgcaagctgctctaaatgctgctgctaagagaaaatataagacaaggtt |
18785347 |
T |
|
| Q |
120 |
tgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttcataatgacaatattatgctggttggtgatggtatgcaaaataccata |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||| ||||| ||||| || |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
18785346 |
tgtgatacatgtgaagaaaggtgtttataaagagaacattgaggttgcggttcacaatgataacattatgttggttggtgatgggatgcaaaataccata |
18785247 |
T |
|
| Q |
220 |
ataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagttata |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18785246 |
ataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattata |
18785179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 279
Target Start/End: Complemental strand, 12803590 - 12803384
Alignment:
| Q |
73 |
caagctgctttaaatgctgctgctaagagaaaatataagacaaggtttgtgatacatgttaagaaaggtgtttatagagagaacattgaggttgctgttc |
172 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| | ||| ||||| ||||| |||| ||| ||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12803590 |
caagatgctataaatgctgctgggaggagaaggtttaaaacaagatttgttatacgtgtgaagaaaggtgtttatagagagaatattgtggttg-ggaag |
12803492 |
T |
|
| Q |
173 |
at-aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaa |
271 |
Q |
| |
|
|| ||||| ||||||||| |||| |||||||| | |||||| | ||||||||| ||||| |||||||| ||||| ||| || ||||||||||| | |
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|
| T |
12803491 |
atgaatgataatattatgttggtaggtgatggaagtagaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgcca |
12803392 |
T |
|
| Q |
272 |
cagcaggt |
279 |
Q |
| |
|
| |||||| |
|
|
| T |
12803391 |
ctgcaggt |
12803384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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