View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11138_low_7 (Length: 310)

Name: NF11138_low_7
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11138_low_7
NF11138_low_7
[»] chr4 (2 HSPs)
chr4 (97-225)||(51358137-51358265)
chr4 (140-181)||(32451537-32451578)
[»] chr5 (2 HSPs)
chr5 (140-207)||(12167260-12167327)
chr5 (139-222)||(14537246-14537329)
[»] chr3 (1 HSPs)
chr3 (154-221)||(32908574-32908641)
[»] chr6 (4 HSPs)
chr6 (143-205)||(2425310-2425372)
chr6 (139-207)||(2428621-2428689)
chr6 (168-221)||(7088922-7088975)
chr6 (168-221)||(8803339-8803392)
[»] chr2 (1 HSPs)
chr2 (139-222)||(27330842-27330925)
[»] chr1 (1 HSPs)
chr1 (139-202)||(44895343-44895406)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 51358137 - 51358265
Alignment:
Q  97 ccaaaatgacatttattgtccaattcatctatcggnnnnnnnggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctc 196  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51358137 ccaaaatgacatttattgtccaattcatctatcggtttttttggccatcaaaggagtagtaatcccttgctcttgtttcccaagctttaaagtaggtctc 51358236  T
Q  197 tgtataatccatccatcttttcgaagttt 225  Q
    |||||||||||||||||||||||||||||    
T  51358237 tgtataatccatccatcttttcgaagttt 51358265  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 32451578 - 32451537
Alignment:
Q  140 gccatcaaaggagtagtaatcccttgctcttgtttcccaagc 181  Q
    |||||||| ||||| |||||||||||||| ||||||||||||    
T  32451578 gccatcaacggagttgtaatcccttgctcctgtttcccaagc 32451537  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 12167327 - 12167260
Alignment:
Q  140 gccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatcca 207  Q
    ||||||||||||||||||||| | |||||||| || |||||||||||||||||||| |||||||||||    
T  12167327 gccatcaaaggagtagtaatctcatgctcttgctttccaagcttcaaagtaggtctttgtataatcca 12167260  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 14537329 - 14537246
Alignment:
Q  139 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaag 222  Q
    |||||||||||||| | |||||| |||||||||||| ||||| |||||||||| |||| ||| ||||||  |||| ||||||||    
T  14537329 ggccatcaaaggagcaataatccattgctcttgttttccaagtttcaaagtagatctccgtaaaatccactcatcatttcgaag 14537246  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 32908641 - 32908574
Alignment:
Q  154 agtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 221  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  32908641 agtaatcccctgctcttgtttcccaagcttcaaagtagatctctgtataatccagacatcatttcgaa 32908574  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 2425310 - 2425372
Alignment:
Q  143 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatc 205  Q
    ||||||| |||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||    
T  2425310 atcaaagaagtagtaatctcttgctcctgtctccccagcttcaaagtaggtctctgtataatc 2425372  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 2428621 - 2428689
Alignment:
Q  139 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatcca 207  Q
    ||||||||||| ||| ||||||| |||||||||| |||| |||||| |||||||||| |||||||||||    
T  2428621 ggccatcaaagaagttgtaatcctttgctcttgtctccctagcttcgaagtaggtctttgtataatcca 2428689  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 7088975 - 7088922
Alignment:
Q  168 cttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 221  Q
    ||||| ||||||||||||||||||||||| | |||||||| || || |||||||    
T  7088975 cttgtctcccaagcttcaaagtaggtctccgcataatccacccgtcatttcgaa 7088922  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 8803339 - 8803392
Alignment:
Q  168 cttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 221  Q
    ||||| ||||||||||||||||||||||| | |||||||| || || |||||||    
T  8803339 cttgtctcccaagcttcaaagtaggtctccgaataatccacccgtcatttcgaa 8803392  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 27330842 - 27330925
Alignment:
Q  139 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaag 222  Q
    ||||||||||||| ||||| || |||||||||||||||||| | || ||| |||||||  |||||| |||| | | ||||||||    
T  27330842 ggccatcaaaggattagtagtcacttgctcttgtttcccaaacctcgaagcaggtctccatataattcatcaaacatttcgaag 27330925  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 44895406 - 44895343
Alignment:
Q  139 ggccatcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtata 202  Q
    ||||||||| ||||| |||||||||||||||| |||   ||||||| |||||||||||| ||||    
T  44895406 ggccatcaatggagttgtaatcccttgctcttatttttgaagcttcgaagtaggtctctctata 44895343  T

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