View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11138_low_9 (Length: 305)
Name: NF11138_low_9
Description: NF11138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11138_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 1890782 - 1890495
Alignment:
| Q |
1 |
atcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1890782 |
atcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaagg |
1890683 |
T |
|
| Q |
101 |
accatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaatttctgtgagatgtttttca |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1890682 |
accatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaatttctatgagatgtttttca |
1890583 |
T |
|
| Q |
201 |
tgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatattatttaagaaactgtttat |
288 |
Q |
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| T |
1890582 |
tgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatattatttaagaaactgtttat |
1890495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1895632 - 1895517
Alignment:
| Q |
1 |
atcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatg |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||| | |
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| T |
1895632 |
atcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattggcaaaacatccatgtaaaagg |
1895533 |
T |
|
| Q |
101 |
accatcttcttgtcat |
116 |
Q |
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|||||||||||||||| |
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| T |
1895532 |
accatcttcttgtcat |
1895517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 1911088 - 1910928
Alignment:
| Q |
1 |
atcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | | ||| ||||| ||||||||| ||||||| |||| || | |
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| T |
1911088 |
atcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaacatccatgtacaagg |
1910989 |
T |
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| Q |
101 |
accatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaa |
162 |
Q |
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|||||||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||||| |
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| T |
1910988 |
accatcttcttgtcat-gtttctgtcacttctatgttctttcagttacacaacaatcacaaa |
1910928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1902043 - 1901928
Alignment:
| Q |
1 |
atcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatg |
100 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | ||||| |||||||||||||||||||||||| |||||| || |
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| T |
1902043 |
atcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtggcaaaacatccatgtaaagtg |
1901944 |
T |
|
| Q |
101 |
accatcttcttgtcat |
116 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
1901943 |
accatcttcttgtcat |
1901928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 1884138 - 1883959
Alignment:
| Q |
1 |
atcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaacatccttgtaaaatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||| | ||||| ||||| |||||||||| || |||| ||||||| | |
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| T |
1884138 |
atcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaatccatgtaaaagg |
1884039 |
T |
|
| Q |
101 |
accatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaat |
181 |
Q |
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||| | |||||||||| ||||| || ||||||||| |||| || |||||||||||||| || ||||||||||||| |
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| T |
1884038 |
accgttttcttgtcat-ctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagttcagaat |
1883959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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