View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11139_high_1 (Length: 556)
Name: NF11139_high_1
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 92 - 547
Target Start/End: Original strand, 25303651 - 25304106
Alignment:
| Q |
92 |
aataatgatagaacacaagattaaatccatcagaccttggggacttatcaggttgcatttgaaatagggcatgtttgcgctcttttctagtaatcagtgt |
191 |
Q |
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| T |
25303651 |
aataatgatagaacgcaggattaaatccatcagacctcgaggacttatcaggttgcatttgaaatagggcatgtttgagctcttttctagtaatcagtgt |
25303750 |
T |
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| Q |
192 |
cataagcatatcattgtattcgtgggtagcccacacactttagaaaatcaagaacatgcgtatggttaccattgttggccgcaaaaaccacatcaaaata |
291 |
Q |
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| T |
25303751 |
cataagcatatcattgtattcgtgggtaacccacacactttagaaaatcaagaacatgcgtatggttaccattgttggctgcaaaaaccacatcaaaata |
25303850 |
T |
|
| Q |
292 |
attctttgctacatcacataggtgctcctatttcataaccaaataaccattatcagacaccagttttataactttcttgactttacctctcgaaacagtg |
391 |
Q |
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| T |
25303851 |
attatttgctacatcacataggtgctcctatctcataaccaaataaccattatcaaacaccagttttgtaactttcttgactttacctctagaaacagtg |
25303950 |
T |
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| Q |
392 |
gacatgtaaaagaaccttgtattcacgtccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcac |
491 |
Q |
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| T |
25303951 |
gacatgtaaaagaaccttctattcacgtccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcac |
25304050 |
T |
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| Q |
492 |
acttctccgtatattcttctaaatgatttgtattcaaacgatcgggttgcctatgc |
547 |
Q |
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| T |
25304051 |
acttctccatattttcttctaaatgatttgtattcacacgattaggttgcctatgc |
25304106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 25302553 - 25302624
Alignment:
| Q |
22 |
tatgtattaatcatccgttttatatcatgaaccatggaattatggaggacatatatactaataatataggaa |
93 |
Q |
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| T |
25302553 |
tatgtgttaatcatctgttttatatcatgaccaatggaattatggaggtcatatatactcataatataggaa |
25302624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 474
Target Start/End: Complemental strand, 7124523 - 7124477
Alignment:
| Q |
428 |
ttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctg |
474 |
Q |
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| T |
7124523 |
ttcaaccagtgcatttttgctctttgcttccaaaacgcctcctcctg |
7124477 |
T |
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