View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11139_high_3 (Length: 426)
Name: NF11139_high_3
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 38092088 - 38091677
Alignment:
| Q |
1 |
atgttttagtcaaaacaaactaaacaagttttctaaaactttcaataaattatattagaatatcatcttgcttaaagtatcaatctacagcctaatggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38092088 |
atgttttagtcaaaacaaactaaacaagttttctaaaactttcaataaattatattagaatatcatcttgcttaaagtatcaatctacagcctaatggca |
38091989 |
T |
|
| Q |
101 |
ttagctacaagcctacaacaccaaattcttaatctatacatcattggccatctcagcttacaactcagatgaactaagtccctcaaagcagggaagatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091988 |
ttagctacaagcctacaacaccaaattcttaatctatacatcattggccatctcaacttacaactcagatgaactaagtccctcaaagcagggaagatac |
38091889 |
T |
|
| Q |
201 |
aatttgagaatgtataatgtactaacttctaaccaatcaaatattatgacatacttcaatgttcaatctgggtctgaactagttttccatgatattaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091888 |
aatttgagaatgtataatgtactaacttctaaccaatcaaatattctgacatactttaatgttcaatctgggtctgaactagttttccatgatattaaca |
38091789 |
T |
|
| Q |
301 |
tgcttctagatacctcctataatgatacaccctttgatggctgcctgtattctgccattatactagtctcagatgcaagtgatggaatactttgttcata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091788 |
tgcttctagatacctcctataatgatacaccctttgatggctgcctgtattctgccattatactagtctcagatgcaagtgatggaatactttgttcata |
38091689 |
T |
|
| Q |
401 |
tttgaaaaaatt |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38091688 |
tttgaaaaaatt |
38091677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University