View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11139_low_10 (Length: 266)
Name: NF11139_low_10
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 24879524 - 24879287
Alignment:
| Q |
9 |
catagggagagtatgatctatcacgcattctgacaggagacctgctgtaaggagagcaagaccgagaatatgatctgtgccggtcataacgatagtacga |
108 |
Q |
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| T |
24879524 |
catagggagagtatgatctatcacgcattctgacaggagacctgctgtaaggagagcgagaccgagaatatgatctgtgccggtcataacgatagtacga |
24879425 |
T |
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| Q |
109 |
tctgcgtcgactgtagtatggcgagtatgccctccttcgcctgtagtcaggagagtaagacctccttcgcctgtaatcaggtgagtaagagcgactccta |
208 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24879424 |
tctgcgtcgactgtagtatggtgagtatgccctccttcgcctgtagtcaggagagtaagacctccttcgcctgtaatcaggtgagtaagagcgactccta |
24879325 |
T |
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| Q |
209 |
ctgtggtctgatgaataaggtgaacgactgtagcttct |
246 |
Q |
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|| |||||||||||||||||||||||| |||||||||| |
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| T |
24879324 |
ctatggtctgatgaataaggtgaacgattgtagcttct |
24879287 |
T |
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