View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11139_low_11 (Length: 239)
Name: NF11139_low_11
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 10028441 - 10028236
Alignment:
| Q |
18 |
gaaagatatataaacgatataaaaatccataacattttagttcaagtgttcccttttctcagtttctgaggataaacattagtgtattaaataagatatt |
117 |
Q |
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| T |
10028441 |
gaaagatatataaacgatataaaaatccgtaacattttagttcaagtgttcccttttctcagtttctgaggataaacattagtgtataaaataagatatt |
10028342 |
T |
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| Q |
118 |
tgtaatgaaagaaaatgattttggaaagcctgaaacaccagccagaagtaatagatcgtcaatgatatgtctagtaacattaattcaaatcaataaccat |
217 |
Q |
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| T |
10028341 |
tgtaaagaaagaaaatgattttggaaagcctgaaacaccagccagaagtaatagatcgtcaatgatatgtctagtaacattaattcaaatcaataaccat |
10028242 |
T |
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| Q |
218 |
taagga |
223 |
Q |
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|||||| |
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| T |
10028241 |
taagga |
10028236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 10050354 - 10050276
Alignment:
| Q |
18 |
gaaagatatataaacgatataaaaatccataacattttagttcaagtgttcccttttctcagtttctgaggataaacat |
96 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10050354 |
gaaagatatataaacgatataaaaatccgtaacattttagttcaagtgttcccttttctcagtttctgaggataaacat |
10050276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 10062381 - 10062345
Alignment:
| Q |
33 |
gatataaaaatccataacattttagttcaagtgttcc |
69 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
10062381 |
gatatagaagtccataacattttagttcaagtgttcc |
10062345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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