View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11139_low_2 (Length: 485)

Name: NF11139_low_2
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11139_low_2
NF11139_low_2
[»] chr4 (1 HSPs)
chr4 (1-469)||(880785-881253)
[»] chr2 (1 HSPs)
chr2 (23-469)||(45268279-45268725)
[»] chr1 (1 HSPs)
chr1 (173-357)||(3294060-3294244)
[»] chr3 (1 HSPs)
chr3 (389-421)||(27312268-27312300)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 881253 - 880785
Alignment:
Q  1 gataaagaaagagaggttgaaaaaagagaggttggtgaagcaaatcaagcgcgaagtttcagtgatgcgtctcgttcgccatcctcatatcgttgaactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  881253 gataaagaaagagaggttgaaaaaagagaggttggtgaagcaaatcaagcgcgaagtttcagtgatgcgtctcgttcgccatcctcatatcgttgaactc 881154  T
Q  101 aaagaagttatggcaacaaagggaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  881153 aaagaagttatggcaacaaagggaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaag 881054  T
Q  201 atgttgctagaaagtattttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttaaaaccagaaaatctactctt 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  881053 atgttgctagaaagtactttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactctt 880954  T
Q  301 ggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaacaacgccgagaggatgggatgcttttaactccgtgtggaacccct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  880953 ggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaacaacgccgagaggatgggatgcttttaactccatgtggaacccct 880854  T
Q  401 gcttacgtggcacctgaggttttgaagaagaaaggttacgatggttccaaagctgacttatggtcttgt 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  880853 gcttacgtggcacctgaggttttgaagaagaaaggttacgatggttctaaagctgacttatggtcttgt 880785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 469
Target Start/End: Complemental strand, 45268725 - 45268279
Alignment:
Q  23 aaagagaggttggtgaagcaaatcaagcgcgaagtttcagtgatgcgtctcgttcgccatcctcatatcgttgaactcaaagaagttatggcaacaaagg 122  Q
    ||||||||| || |||| |||||||| || |||||||| ||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| |  ||||    
T  45268725 aaagagaggctgatgaaacaaatcaaacgtgaagtttccgtgatgcgtctcgttcgtcatccacatattgttgagcttaaagaagtaatggctaacaagg 45268626  T
Q  123 gaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttca 222  Q
      ||| ||||  | || || ||||| || |||||||||||||| |||  ||| || || ||||| ||| || | ||| || |||| ||||||||||||||    
T  45268625 ctaaagtcttcatggttgttgaatacgtcaaaggaggtgaacttttcgccaaagtcgccaaaggtaaaatggaagaaaatattgccagaaagtattttca 45268526  T
Q  223 acaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttaaaaccagaaaatctactcttggatgaaaacgaagacctcaag 322  Q
    |||| | || |||||||| ||||| || |||||||| || || ||||| || ||| | ||||| || ||||| || ||||||||||| ||||| || |||    
T  45268525 acaattgatcagtgctgtagatttctgtcatagtcggggagttacacaccgtgatcttaaacccgagaatcttcttttggatgaaaatgaagatcttaag 45268426  T
Q  323 gtctccgattttggactctcagcgttgccagaacaacgccgagaggatgggatgcttttaactccgtgtggaacccctgcttacgtggcacctgaggttt 422  Q
    || || ||||||||  | ||||| || || || |||||  ||   ||||| |||||| | || || ||||| || |||||||| || |||||||| ||||    
T  45268425 gtatctgattttggtttatcagcattacctgatcaacgtagatccgatggaatgcttctcacaccttgtgggactcctgcttatgttgcacctgaagttt 45268326  T
Q  423 tgaagaagaaaggttacgatggttccaaagctgacttatggtcttgt 469  Q
    |||||||||  ||||| ||||| || ||||||||  | |||||||||    
T  45268325 tgaagaagattggttatgatggatcaaaagctgatatttggtcttgt 45268279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 357
Target Start/End: Complemental strand, 3294244 - 3294060
Alignment:
Q  173 aaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatc 272  Q
    |||||||||||||| ||||| || |||||  |||| |||||||| || ||||| || || |||||||| |||| |||||||||| | |||||  | ||||    
T  3294244 aaggtagcaaaaggtaaatttaaggaagaacttgcaagaaagtacttccaacagcttataagtgctgtagattattgccatagtagaggtgtttctcatc 3294145  T
Q  273 gcgatttaaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaaca 357  Q
    | ||||||||||| || ||| || |  | |||||||||||  | || || |||||||||||||| ||||| || ||||| |||||    
T  3294144 gtgatttaaaaccggagaatttattactcgatgaaaacgagaatcttaaagtctccgattttggtctctctgctttgcctgaaca 3294060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 421
Target Start/End: Complemental strand, 27312300 - 27312268
Alignment:
Q  389 tgtggaacccctgcttacgtggcacctgaggtt 421  Q
    |||||||||||||||||||||||||||||||||    
T  27312300 tgtggaacccctgcttacgtggcacctgaggtt 27312268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University