View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11139_low_3 (Length: 485)
Name: NF11139_low_3
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 43855430 - 43855615
Alignment:
| Q |
38 |
ctgtttcaccttctctcattatttattcattcaattcaaacgcatt----cattcaattgtttttctctcccacattcacgctccatcatcgtggagtaa |
133 |
Q |
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| T |
43855430 |
ctgtttcaccttctctcattatttattcattcaattcaaacgcattcattcattcaattgtttttctctcccacattcacgctccatcatcgtggagtaa |
43855529 |
T |
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| Q |
134 |
ctaaaacagagaaataaacattcttaataactccgaaaacgcatccatcatctcttccgatctccaaaatgcaggctacactttta |
219 |
Q |
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| T |
43855530 |
ctaaaacagagaaataaacattcttaataactccgaaaacgcattcatcatcttttccgatctccaaaatgcaggctacactttta |
43855615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 43855747 - 43855869
Alignment:
| Q |
351 |
aacaccccttcattcctctacccgcttccaaaccaaagcaaccaccaccatcgacgccgccgactcctccgacagcagtagtcctctattcaaagctcta |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43855747 |
aacaccccttcattcctctacccgcttccaaaccaaagcaaccaccaccatcgacgccgccgactcctccgacagcagtagtcctctattcaaagctcta |
43855846 |
T |
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| Q |
451 |
gagcttggagttcttttttgcct |
473 |
Q |
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| T |
43855847 |
gagcttggagttcttttttgcct |
43855869 |
T |
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