View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11139_low_4 (Length: 460)
Name: NF11139_low_4
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 51273689 - 51274120
Alignment:
| Q |
18 |
catactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273689 |
catactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatc |
51273788 |
T |
|
| Q |
118 |
ttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttata |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51273789 |
tcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttata |
51273888 |
T |
|
| Q |
218 |
ttcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273889 |
ttcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatc |
51273988 |
T |
|
| Q |
318 |
aaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51273989 |
aaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagca |
51274088 |
T |
|
| Q |
418 |
caaagaaagtatctttcaaccatcacaggttc |
449 |
Q |
| |
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| T |
51274089 |
caaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
55 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
96 |
Q |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 97 - 394
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
97 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
196 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
197 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
296 |
Q |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
297 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
394 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||| ||||||| ||||| |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5051676 - 5051458
Alignment:
| Q |
19 |
atactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatct |
118 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| | | ||||||| | ||||| |
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| T |
5051676 |
atactttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatct |
5051578 |
T |
|
| Q |
119 |
taatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatat |
218 |
Q |
| |
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||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||||| |||||||||||||| ||| ||||||| |
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| T |
5051577 |
ccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcat-ccttatat |
5051479 |
T |
|
| Q |
219 |
tcgagaattgtcggattttca |
239 |
Q |
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||||||||||| ||||||||| |
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| T |
5051478 |
tcgagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 295 - 449
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
295 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
393 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
394 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
449 |
Q |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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