View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11139_low_6 (Length: 420)
Name: NF11139_low_6
Description: NF11139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11139_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 1623781 - 1624181
Alignment:
| Q |
19 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgctagacaagttgca |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1623781 |
catcaatgcctgaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgttagacaagttgca |
1623880 |
T |
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| Q |
119 |
agaaagccattagacacttatgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaatttt |
218 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1623881 |
agaaagccattagagaattatgaatatcatatatagctatgatataaagagcacatttccatgacatctaattttcaacactgatttactattgaatttt |
1623980 |
T |
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| Q |
219 |
agggctttaaaactagaaaaaactaaatagggcttttcagcactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttcgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623981 |
agggctttaaaactagaaaaaactaaatagggcttttcaacactgatttacacaaagatacatgtagattgattttatttttccagtctctatctttcgt |
1624080 |
T |
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| Q |
319 |
tgttagttcgactttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcagagcta |
418 |
Q |
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| T |
1624081 |
tgttagttcgactttttcaagcagtgaatattg-tttttctcttataacaagaacataaaacaggaaatgaaatataattcacctgctgttgcagagcta |
1624179 |
T |
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| Q |
419 |
ta |
420 |
Q |
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| T |
1624180 |
ta |
1624181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 1606659 - 1606873
Alignment:
| Q |
19 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaa-ttagaaactataaataacattctaaactcta--aagtgttcgtgctagacaagtt |
115 |
Q |
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| T |
1606659 |
catcaatacctaaatttaaatgatccaagagaaatatgtaaaaaattagaaactataaataacaatctaaactctataaagtgttcgtgctacataagtt |
1606758 |
T |
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| Q |
116 |
gcaagaaagccattagacacttatgaatatcatatatagctatgatataaagagcacatttccgtgacatctaattttcaacactgatttactattgaat |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||| |
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| T |
1606759 |
gcaagaaagccattagaccagtatgaatatcatatatacctatgatataaagagcacatttccgtgacaactagttttaaacactgatttagtattgaat |
1606858 |
T |
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| Q |
216 |
tttagggctttaaaa |
230 |
Q |
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| T |
1606859 |
tttagggctttaaaa |
1606873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 315 - 420
Target Start/End: Original strand, 1607056 - 1607160
Alignment:
| Q |
315 |
tcgttgttagttcgactttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcaga |
414 |
Q |
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|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1607056 |
tcgttgttagttaaactttttctagcagtgaatattgtttt-tctcttataacaagaacataaaacaggaaatgaaatataattcacctgctgttgcaga |
1607154 |
T |
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| Q |
415 |
gctata |
420 |
Q |
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|||||| |
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| T |
1607155 |
gctata |
1607160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 18781475 - 18781563
Alignment:
| Q |
19 |
catcaatgcctaaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacattctaaactctaaagtgttcgtgcta |
107 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
18781475 |
catcaatgcctgaatttaaaagattcaagagaaatatgtaaaaattagaaactataaataacaatctaaactctaaagtgtccgtgcta |
18781563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 315 - 420
Target Start/End: Original strand, 18785103 - 18785207
Alignment:
| Q |
315 |
tcgttgttagttcgactttttcaagcagtgaatattgttttttctcttataacaagaacataaaacaggaaatgaaatataaatcacctgctgttgcaga |
414 |
Q |
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|||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
18785103 |
tcgttgttagttaaactttttctagcagtgaatattgtttt-tctcttataacaagaacacaaaacaggaaatgaattataattcacctgctgttgcaga |
18785201 |
T |
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| Q |
415 |
gctata |
420 |
Q |
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|||||| |
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| T |
18785202 |
gctata |
18785207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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