View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1113_low_1 (Length: 745)

Name: NF1113_low_1
Description: NF1113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1113_low_1
NF1113_low_1
[»] chr7 (1 HSPs)
chr7 (29-737)||(21483333-21484041)


Alignment Details
Target: chr7 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 29 - 737
Target Start/End: Original strand, 21483333 - 21484041
Alignment:
Q  29 aacctcatcaacctatcaccaggaccaggaaacaactgataagaattatattgatttccataacctccaaaattcataccatgaggttgtagcacattgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21483333 aacctcatcaacctatcaccaggaccaggaaacaactgataagaattatattgatttccataacctccaaaattcataccatgaggttgtagcacattgt 21483432  T
Q  129 tgttattttccacaaatgattgattgtagtttggtgcaacattgaattgagaagcaccccatgaatgatttgattccaacatgtgatattcattagtaac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21483433 tgttattttccacaaatgattgattgtagtttggtgcaacattgaattgagaagcaccccatgaatgatttgattccaacatgtgatattcattagtaac 21483532  T
Q  229 agcaggttggtaagggttaatgttatttgaaacagaaccatttgtgtaaggatcagcaacaaatccaacgccaactccaaccattggttgtgaaaattgt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21483533 agcaggttggtaagggttaatgttatttgaaacagaaccatttgtgtaaggatcagcaacaaatccaactccaactccaaccattggttgtgaaaattgt 21483632  T
Q  329 tgtggaggtacaatgagaggtgtttgatctagccatgatgtttggttgaaacacgtgttcgattcaggtgcaaatgtgtttgctgtgttttggttctgac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  21483633 tgtggaggtacaatgagaggtgtttgatctagccatgatgtttggttgaaacatgcgttcgattcaggtgcaaatgtgtttgctgtgttttggttctgac 21483732  T
Q  429 acggatcttgaaaatgttgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttgtgaagatgactagt 528  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21483733 acggatcttgaaaatgatgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttatgaagatgactagt 21483832  T
Q  529 ttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcgatcgtcgatttcttaagcttc 628  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  21483833 ttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcaatcgttgatttcttaagcttc 21483932  T
Q  629 acattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgcaccta 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21483933 acattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgcaccta 21484032  T
Q  729 attcatctc 737  Q
    |||||||||    
T  21484033 attcatctc 21484041  T

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