View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1113_low_4 (Length: 447)

Name: NF1113_low_4
Description: NF1113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1113_low_4
NF1113_low_4
[»] chr7 (9 HSPs)
chr7 (8-419)||(43403976-43404387)
chr7 (185-232)||(41263129-41263176)
chr7 (67-154)||(41181167-41181254)
chr7 (349-391)||(43403395-43403437)
chr7 (339-376)||(32062029-32062066)
chr7 (340-376)||(663444-663480)
chr7 (235-270)||(41263192-41263228)
chr7 (339-375)||(41535696-41535732)
chr7 (49-124)||(42334015-42334086)
[»] chr2 (6 HSPs)
chr2 (51-186)||(13156252-13156386)
chr2 (15-166)||(27442877-27443028)
chr2 (339-387)||(9201678-9201726)
chr2 (339-376)||(10058877-10058914)
chr2 (343-376)||(14483248-14483281)
chr2 (339-384)||(14925250-14925295)
[»] chr3 (2 HSPs)
chr3 (46-136)||(47314462-47314550)
chr3 (339-376)||(20079728-20079765)
[»] chr1 (5 HSPs)
chr1 (76-183)||(29634155-29634262)
chr1 (339-389)||(28006735-28006785)
chr1 (342-376)||(43284051-43284085)
chr1 (340-376)||(619427-619463)
chr1 (344-376)||(6842307-6842339)
[»] chr4 (7 HSPs)
chr4 (44-129)||(55961459-55961544)
chr4 (68-182)||(7172774-7172886)
chr4 (339-376)||(3970023-3970060)
chr4 (338-375)||(31041733-31041770)
chr4 (339-376)||(48171887-48171924)
chr4 (339-376)||(49579961-49579998)
chr4 (343-379)||(50502770-50502806)
[»] chr5 (1 HSPs)
chr5 (339-388)||(10917324-10917373)
[»] chr6 (2 HSPs)
chr6 (339-377)||(24373728-24373766)
chr6 (339-376)||(29283821-29283858)
[»] chr8 (1 HSPs)
chr8 (343-384)||(8687864-8687905)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 43403976 - 43404387
Alignment:
Q  8 tagcatagggactggattctctgcagttaagcagagtccaatgaaatcatgaccattggaaaaacataaaagcatagagaattaaatggagaaatcaaaa 107  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43403976 tagcatggggactggattctctgtagttaagcagagtccaatgaaatcatgaccattggaaaaacataaaagcatagagaattaaatggagaaatcaaaa 43404075  T
Q  108 gagataaagtgtttaatgatattgatgttaagattgcataaaactatagagatttccacagcaggaaatccattcccgctagtatgagctaaatgcctaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  43404076 gagataaagtgtttaatgatattgatgttaagattgcataaaactgtagagatttccacagcaggaaatccattcccgctggcatgagctaaatgcctaa 43404175  T
Q  208 atgttcactataacttttgaaaatattagtcattgaatattttgaactggtttagaaactttgagtagcgaatagctaataacatatgatttgtnnnnnn 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  43404176 atgttcactataacttttgaaaatattagtcattgaatattttgaactggtttagaaactttgagtagcgaatagctaataacatatgatttgtaaaaaa 43404275  T
Q  308 nnnnnntgataaggtatgaaattatagcggattgcatatattatacattgtctctactaattgagttaaatttacgatgactaaatttttagtatttgat 407  Q
          |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  43404276 aaaaaatgataaggtatgaaattacagcggattgcatatactatacattgtctctactaattgagttaaattcacgatgactaaatttttagtgtttgat 43404375  T
Q  408 atggtaagtagt 419  Q
    ||||||||||||    
T  43404376 atggtaagtagt 43404387  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 41263129 - 41263176
Alignment:
Q  185 gctagtatgagctaaatgcctaaatgttcactataacttttgaaaata 232  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  41263129 gctagcatgagttaaatgcctaaatgttcactataacttttgaaaata 41263176  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 41181167 - 41181254
Alignment:
Q  67 aaaaacataaaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaatgatattgatgttaagattgcataaaactat 154  Q
    ||||| || ||||||||||| |||||||| |||||| |  ||||||||||||||||||| || ||||||| | | |||| ||||||||    
T  41181167 aaaaaaatcaaagcatagagcattaaatgtagaaattaggagagataaagtgtttaatggtagtgatgttgacactgcagaaaactat 41181254  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 43403437 - 43403395
Alignment:
Q  349 tatacattgtctctactaattgagttaaatttacgatgactaa 391  Q
    ||||||||||||||| ||||||||||||| | |||||||||||    
T  43403437 tatacattgtctctattaattgagttaaactcacgatgactaa 43403395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 32062066 - 32062029
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    |||||||||||||||||||||||||| || ||||||||    
T  32062066 ttgcatatattatacattgtctctaccaactgagttaa 32062029  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 663480 - 663444
Alignment:
Q  340 tgcatatattatacattgtctctactaattgagttaa 376  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  663480 tgcatatattatacatggtccctactaattgagttaa 663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 270
Target Start/End: Original strand, 41263192 - 41263228
Alignment:
Q  235 agtcattgaatatttt-gaactggtttagaaactttg 270  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41263192 agtcattgaatatttttgaactggtttagaaactttg 41263228  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 41535732 - 41535696
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagtta 375  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  41535732 ttgcatatattatacattgtccctactagttgagtta 41535696  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 42334086 - 42334015
Alignment:
Q  49 tgaaatcatgaccattggaaaaacataaaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaat 124  Q
    ||||||||||||||||| |||||  ||||| |||||| ||||||||| | |||| | |||||||||||||||||||    
T  42334086 tgaaatcatgaccattgaaaaaa--taaaa-catagacaattaaatgca-aaattagaagagataaagtgtttaat 42334015  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 13156252 - 13156386
Alignment:
Q  51 aaatcatgaccattggaaaaacataaaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaatgatattgatgttaagattgcataaaa 150  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||  ||||||||  || ||| |||||||||||| |||||||||| | | ||||| |||    
T  13156252 aaatcatgatcattgaaaaaa-ataaaagcatagagaattaaatatagaaatcaggagcgatgaagtgtttaatggtattgatgttgacactgcatgaaa 13156350  T
Q  151 ctatagagatttccacagcaggaaatccattcccgc 186  Q
     | ||||||||| ||| |||||| || |||||||||    
T  13156351 ttgtagagattttcactgcaggagattcattcccgc 13156386  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 27443028 - 27442877
Alignment:
Q  15 gggactggattctctgcagttaa-gcagagtccaatgaaatcatgaccattggaaaaacataaaagcatagagaattaaatggagaaatcaaaagagata 113  Q
    |||||||||||||||| ||| |  |||| |||||||||| |||||||||||| ||||| || |||||| ||||||||||||| |  |||||  |||||||    
T  27443028 gggactggattctctgtagtgactgcagggtccaatgaattcatgaccattgaaaaaa-atgaaagcaaagagaattaaatgtaacaatcaggagagata 27442930  T
Q  114 aagtgtttaatgatattgatgttaagattgcataaaactatagagatttccac 166  Q
    |||||| ||||| ||||||| || | |  ||| |||||| |||| ||||||||    
T  27442929 aagtgtctaatggtattgatattgacaccgcagaaaactgtagaaatttccac 27442877  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 9201726 - 9201678
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaaatttacgatga 387  Q
    |||||||||||||| |||||||||| |||||||||||| ||||| ||||    
T  9201726 ttgcatatattatatattgtctctattaattgagttaattttacaatga 9201678  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 10058914 - 10058877
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  10058914 ttgcatatattatgcattgtctctaccaattgagttaa 10058877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 14483248 - 14483281
Alignment:
Q  343 atatattatacattgtctctactaattgagttaa 376  Q
    ||||||||||||||||||||| ||||||||||||    
T  14483248 atatattatacattgtctctagtaattgagttaa 14483281  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 14925250 - 14925295
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaaatttacga 384  Q
    |||||||||||||||||||||  ||| || ||||||||||||||||    
T  14925250 ttgcatatattatacattgtccttaccaactgagttaaatttacga 14925295  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 47314550 - 47314462
Alignment:
Q  46 caatgaaatcatgaccattggaaaaacataaaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaatgatattgatgtt 136  Q
    |||||||||||||  ||||| ||||| |||||| ||| |||||||||||  |||||||  ||||||| || ||||||||||||| ||||||    
T  47314550 caatgaaatcatggtcattgaaaaaaaataaaaacattgagaattaaatttagaaatc--aagagattaaatgtttaatgatatagatgtt 47314462  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 20079765 - 20079728
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  20079765 ttgcatatattatacattgtctctactaactgagttaa 20079728  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 29634262 - 29634155
Alignment:
Q  76 aaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaatgatattgatgttaagattgcataaaactatagagatttccacagcaggaaa 175  Q
    |||||||||| ||||||||| |||||| |  | ||| ||||||||||||  ||||||| || | | |||| |||||| || |||||| |||||||| |||    
T  29634262 aaagcatagaaaattaaatgcagaaattaggatagaaaaagtgtttaatagtattgattttgacactgcaaaaaactgtatagattttcacagcagaaaa 29634163  T
Q  176 tccattcc 183  Q
    ||||||||    
T  29634162 tccattcc 29634155  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 28006785 - 28006735
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaaatttacgatgact 389  Q
    ||||||||||||| |||||||| || ||| ||||||||| |||||||||||    
T  28006785 ttgcatatattatgcattgtctatattaactgagttaaacttacgatgact 28006735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 43284051 - 43284085
Alignment:
Q  342 catatattatacattgtctctactaattgagttaa 376  Q
    |||||||||||||||||||||||||| ||||||||    
T  43284051 catatattatacattgtctctactaactgagttaa 43284085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 619427 - 619463
Alignment:
Q  340 tgcatatattatacattgtctctactaattgagttaa 376  Q
    ||||||||||||||||||||||||| || ||||||||    
T  619427 tgcatatattatacattgtctctaccaactgagttaa 619463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 6842307 - 6842339
Alignment:
Q  344 tatattatacattgtctctactaattgagttaa 376  Q
    |||||||| ||||||||||||||||||||||||    
T  6842307 tatattatgcattgtctctactaattgagttaa 6842339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 55961459 - 55961544
Alignment:
Q  44 tccaatgaaatcatgaccattggaaa-aacataaaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaatgatat 129  Q
    |||||||||||||||||||||| ||| || ||||||  | ||||||||||||| ||||| || |||||||||| |||||||| ||||    
T  55961459 tccaatgaaatcatgaccattgaaaataaaataaaat-agagagaattaaatgtagaaaccagaagagataaaatgtttaataatat 55961544  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 7172774 - 7172886
Alignment:
Q  68 aaaacataaaagcatagagaattaaatggagaaatcaaaagagataaagtgtttaatgatattgatgttaagattgcataaaactatagagatttccaca 167  Q
    |||| |||||| |||||  |||||| || ||||||||||||| |||  |||||||||||||| |||||| | |||| | ||||||  ||||||| ||||     
T  7172774 aaaaaataaaaacatagtaaattaattgtagaaatcaaaagatata--gtgtttaatgatatagatgttcacattggagaaaactggagagattcccacg 7172871  T
Q  168 gcaggaaatccattc 182  Q
     ||| ||||||||||    
T  7172872 tcagaaaatccattc 7172886  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 3970023 - 3970060
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  3970023 ttgcatatattatacattgtctttactaactgagttaa 3970060  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 31041733 - 31041770
Alignment:
Q  338 attgcatatattatacattgtctctactaattgagtta 375  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  31041733 attgcatatattatacattgtccatactaattgagtta 31041770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 48171924 - 48171887
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    |||||||||||||||||||||||||| || ||||||||    
T  48171924 ttgcatatattatacattgtctctaccaactgagttaa 48171887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 49579998 - 49579961
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  49579998 ttgcatatattatacattgtccctaccaattgagttaa 49579961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 50502770 - 50502806
Alignment:
Q  343 atatattatacattgtctctactaattgagttaaatt 379  Q
    |||||||||||| | ||||||||||||||||||||||    
T  50502770 atatattatacaatatctctactaattgagttaaatt 50502806  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 10917373 - 10917324
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaaatttacgatgac 388  Q
    ||||||||||||| |||||| ||||| |||||||||||| ||||||||||    
T  10917373 ttgcatatattatgcattgtttctaccaattgagttaaacttacgatgac 10917324  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 24373728 - 24373766
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaaa 377  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  24373728 ttgcatatattatgcattgtctctaccaattgagttaaa 24373766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 29283858 - 29283821
Alignment:
Q  339 ttgcatatattatacattgtctctactaattgagttaa 376  Q
    |||||||||||||||||||||||||| || ||||||||    
T  29283858 ttgcatatattatacattgtctctaccaactgagttaa 29283821  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 8687905 - 8687864
Alignment:
Q  343 atatattatacattgtctctactaattgagttaaatttacga 384  Q
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T  8687905 atatattatacattgtccctaccaattgagttaaattcacga 8687864  T

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