View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1113_low_8 (Length: 291)
Name: NF1113_low_8
Description: NF1113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1113_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 1591131 - 1591282
Alignment:
| Q |
29 |
agtttctttatttgtgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcg |
128 |
Q |
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| T |
1591131 |
agtttctttatttctgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcg |
1591230 |
T |
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| Q |
129 |
ctgttttcgctatttccatgtattctttgatcttctccttagtcatagcaaa |
180 |
Q |
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| T |
1591231 |
ctgttttcgctatttccatgtattctttaatcttctccttagtcatagcaaa |
1591282 |
T |
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Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 19270926 - 19271077
Alignment:
| Q |
29 |
agtttctttatttgtgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcg |
128 |
Q |
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| T |
19270926 |
agtttctttatttgtgccaactcttcttgagtataaaattggggagcaagtgtagctatgacgcattgccaagcaaaattatggtgagggttgaatggcg |
19271025 |
T |
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| Q |
129 |
ctgttttcgctatttccatgtattctttgatcttctccttagtcatagcaaa |
180 |
Q |
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| T |
19271026 |
ctgttttcgctatttccatgtattcgttgatcttctccttagtcatagcaaa |
19271077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 39616382 - 39616530
Alignment:
| Q |
30 |
gtttctttatttgtgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcgc |
129 |
Q |
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||||||||||||||| ||||||||||| || |||||||||||||||| || ||||||| ||||||||||||| ||| |||||| || |||||| |||||| |
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| T |
39616382 |
gtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaaagttatgggaaaggttgagtggcgc |
39616481 |
T |
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| Q |
130 |
tgttttcgctatttccatgtattctttgatcttctccttagtcatagca |
178 |
Q |
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||||| ||| ||||||||||| |||||||||||||| |||| |||||| |
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| T |
39616482 |
cgtttttgctttttccatgtatcctttgatcttctccctagtgatagca |
39616530 |
T |
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