View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1113_low_9 (Length: 253)
Name: NF1113_low_9
Description: NF1113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1113_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8568582 - 8568361
Alignment:
| Q |
1 |
aaactctgcaccctttgcttagggatccttcagtttaggtttcacgatgataataataataatacaaatgtccctcttctcatttctgatatggttaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8568582 |
aaactctgcaccctttgcttagggatccttcagtttaggtttcacgatgataataataata---caaatgtccctcttctcatttctgatatggttaaac |
8568486 |
T |
|
| Q |
101 |
gtcaaggctatcactctcatcatgattcattttccctggaaatcatcattccttctattatcctcaacaacgataacactcttaggcaatacatcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8568485 |
gtcaaggctatcactctcatcatgattccttttccctggaaataatcattccttctattatcctcaacaacgataacactcttaggcaatacatcaaaat |
8568386 |
T |
|
| Q |
201 |
caaatatggtttcaaagataatact |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8568385 |
caaatatggtttcaaagataatact |
8568361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University