View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11140_high_2 (Length: 446)
Name: NF11140_high_2
Description: NF11140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11140_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 430
Target Start/End: Original strand, 5643935 - 5644353
Alignment:
| Q |
12 |
atgaaccctaagacaagatattctcaacatggaacaaaatcaataatacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5643935 |
atgaaccctaagacaagatattctcaacatggaacaaaatcaataatacaatattttcagcatgaaatcaaataaatgaatccaaaaacacaaacttttc |
5644034 |
T |
|
| Q |
112 |
aacatgaaatggaatcaaataaatgaacactaaaacacaaattttcaaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaat |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5644035 |
aacatgaaatggtatcaaataaatgaacactaaaacacaaatttttaaaatgaaatcatacacaatgaaaacataattttcaaactgaaatcaaactaat |
5644134 |
T |
|
| Q |
212 |
aaaccttggaacacaatattcaacatgaaatcaattaaaataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5644135 |
aaaccttggaacacaatattcaacatgaaatcaattaaaataaaaacataattatcaacatcaaatcaaagatacaaacccctaaaacacaattttcaac |
5644234 |
T |
|
| Q |
312 |
gtaaagtcaaataaaataaacttgaaaacataattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatat |
411 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5644235 |
gtaaaatcaaataaaataaactttaaaacacaattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatat |
5644334 |
T |
|
| Q |
412 |
aaccccatcaacattcact |
430 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5644335 |
aaccccatcaacattcact |
5644353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 423
Target Start/End: Original strand, 35535369 - 35535454
Alignment:
| Q |
338 |
aacataattttatcaacaataaatgtgataaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaac |
423 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||| ||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
35535369 |
aacacaattttatcaacattaaatgatataaaaatagaaaccttgacataagcattattatccagattatatataaccccatcaac |
35535454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 1342115 - 1342170
Alignment:
| Q |
368 |
aaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaac |
423 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| |
|
|
| T |
1342115 |
aaaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaac |
1342170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 9394576 - 9394629
Alignment:
| Q |
370 |
aataggaaccttaacataagcattatcattcagcttatatataaccccatcaac |
423 |
Q |
| |
|
||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| |
|
|
| T |
9394576 |
aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaac |
9394629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 31944085 - 31944141
Alignment:
| Q |
367 |
aaaaataggaaccttaacataagcattatcattcagcttatatataaccccatcaac |
423 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | ||||||||| | || ||||||||| |
|
|
| T |
31944085 |
aaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaac |
31944141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University