View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11140_low_12 (Length: 239)
Name: NF11140_low_12
Description: NF11140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11140_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40803857 - 40804082
Alignment:
| Q |
1 |
aactgtataaaaactgaggattaataaacaacttaacagaaagggcaagcatgtacataaaagctgaatcagcgaatatgcaggagacagagttgagaat |
100 |
Q |
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| T |
40803857 |
aactgtatagaaactgaggattaataaacaacttaacagaaagggcaagcatgtacataatagctgaatcagcgaatatgcaggagacagtgttgagaat |
40803956 |
T |
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| Q |
101 |
ttcaataaaaaatgcatgtcctctgcagaaactaattcatatggagtagtgaccaattnnnnnnnnngattgaattatgaaaatatcaaagattcaaact |
200 |
Q |
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| T |
40803957 |
ttcaataaaaaatgcatgtcctctgcagaaactaattcatatggagtagtgaccaattaaaaaaaaagattgaattacgaaaatatcaaagattcaaact |
40804056 |
T |
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| Q |
201 |
cagtatcattacaatttggaccatat |
226 |
Q |
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| T |
40804057 |
cagtatcattacaatttggaccatat |
40804082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 52517034 - 52517203
Alignment:
| Q |
1 |
aactgtataaaaact--gaggattaataaacaacttaacagaaagggcaagcatgtacataaaagctgaatcagcgaatatgcaggagacagagttgag- |
97 |
Q |
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| T |
52517034 |
aactgtatagaaactttgaggattaataaacaacttaacagaaagggct----tgtacataaaagct-aatcagggaggatgcaggagacaaagttgagt |
52517128 |
T |
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| Q |
98 |
--------------aatttcaataaaaaatgcatgtcctctgcagaaactaattcatatggagtagtgaccaatt |
158 |
Q |
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| T |
52517129 |
aaaataaccatgaaaatttcaataaaaaatgcatgccatctgcagaaactagttcatattgagtagtaaccaatt |
52517203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 41031683 - 41031528
Alignment:
| Q |
15 |
tgaggattaataaacaacttaacagaaagggcaagcatgtacataaaagctgaatcagcgaatatgcaggagacagagttgag---------------aa |
99 |
Q |
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| T |
41031683 |
tgaggattaataaacaacttaa-agaaagggct----tgtagataaaagctgaatcagggaagatgcaggagacagagttgagtaaaagaaccatgaaaa |
41031589 |
T |
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| Q |
100 |
tttcaataaaaaatgcatg--tcctctgcagaaactaattcatatggagtagtgaccaatt |
158 |
Q |
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| T |
41031588 |
tttcaataaaaaatgcatgaatcctctgcagaaactagttcatattgagtagtaaccaatt |
41031528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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