View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11140_low_13 (Length: 238)
Name: NF11140_low_13
Description: NF11140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11140_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33468692 - 33468914
Alignment:
| Q |
1 |
tgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33468692 |
tgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccat |
33468791 |
T |
|
| Q |
101 |
ccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaaaccctatttcagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33468792 |
ccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaaaccctatttcagat |
33468891 |
T |
|
| Q |
201 |
tttagaactggaagtgtgattcc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33468892 |
tttagaactggaagtgtgattcc |
33468914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34604110 - 34603936
Alignment:
| Q |
1 |
tgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccat |
100 |
Q |
| |
|
||||||| ||||| ||| ||||||||| |||||||| ||| ||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| ||| |
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| T |
34604110 |
tgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaattttgaactggaagtctggtgattcgatgatcatt---cat |
34604014 |
T |
|
| Q |
101 |
ccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttc |
178 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
34604013 |
cagggtcttaaaagcatctatgtcttttataaactcttcatactcttccctcttaccatgaaacacagattttacttc |
34603936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34725387 - 34725213
Alignment:
| Q |
1 |
tgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccat |
100 |
Q |
| |
|
||||||| ||||| ||| ||||||||| |||||||| ||| ||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| ||| |
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| T |
34725387 |
tgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaattttgaactggaagtctggtgattcgatgatcatt---cat |
34725291 |
T |
|
| Q |
101 |
ccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttc |
178 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
34725290 |
cagggtcttaaaagcatctatgtcttttataaactcttcatactcttccctcttaccatgaaacacagattttacttc |
34725213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3045717 - 3045573
Alignment:
| Q |
1 |
tgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccat |
100 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||||||||| |||| |||||||||||| | || |||||||||| |||| |||||| || | ||| |
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| T |
3045717 |
tgaatcctaaaattaaatatttatgccctttaagtacctcgttcaccctttctttgaactcttgaactggaagt---acgattggatgatgatccttcat |
3045621 |
T |
|
| Q |
101 |
ccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttc |
148 |
Q |
| |
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|||||||| ||| ||| |||| ||||||||||||| ||||||||||| |
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| T |
3045620 |
gcaggtcttgaaatcatctatggcttttataaactcatcatacttttc |
3045573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38868827 - 38869048
Alignment:
| Q |
1 |
tgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccat |
100 |
Q |
| |
|
||||||||||||| |||| |||||| |||||| |||| ||||| | ||| |||||||| || ||||||||||||| | |||||||| || || ||| |
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| T |
38868827 |
tgaatcccaaaattaaatacatatgccctttaaggacctcattcaccatttgtttgaattcttgaactggaagtctg---actcgatgatgatcattcat |
38868923 |
T |
|
| Q |
101 |
ccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttac--catgaaacacagtttttacttcatggagaaaccctatttcag |
198 |
Q |
| |
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|| |||| ||| ||| ||||||||||| ||||| ||||| | ||| || || | | |||||||| ||||||||||||||||||||| ||| ||| |
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| T |
38868924 |
gcatctcttgaaatcatctatgtcttttacaaacttatcatattcttcccttttgcgccgtgaaacacgccttttacttcatggagaaacccaattccag |
38869023 |
T |
|
| Q |
199 |
attttagaactggaagtgtgattcc |
223 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
38869024 |
attttagaactggaagtgcgattcc |
38869048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 39046701 - 39046606
Alignment:
| Q |
118 |
gtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaaaccctatttcagattttagaactggaa |
213 |
Q |
| |
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|||| |||||||||||||| ||| ||| || |||||||||||||| | || ||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
39046701 |
gtatctcttttataaactcatcacactctttcctcttaccatgaaataaagcttttacttcatggagaaaccctattccagattttgcaactggaa |
39046606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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