View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11140_low_8 (Length: 249)

Name: NF11140_low_8
Description: NF11140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11140_low_8
NF11140_low_8
[»] chr6 (6 HSPs)
chr6 (1-239)||(33468385-33468623)
chr6 (185-235)||(13851738-13851788)
chr6 (185-239)||(19040354-19040408)
chr6 (185-235)||(30866151-30866201)
chr6 (194-235)||(26314641-26314682)
chr6 (194-234)||(15443706-15443746)
[»] chr5 (8 HSPs)
chr5 (192-236)||(35904654-35904698)
chr5 (189-227)||(8420033-8420071)
chr5 (185-235)||(30502395-30502445)
chr5 (185-235)||(30542738-30542788)
chr5 (185-239)||(43208277-43208331)
chr5 (190-235)||(30136681-30136726)
chr5 (185-230)||(38749575-38749620)
chr5 (186-234)||(17593730-17593778)
[»] chr7 (2 HSPs)
chr7 (189-229)||(13427322-13427362)
chr7 (185-235)||(42720897-42720947)
[»] chr3 (3 HSPs)
chr3 (195-235)||(39002044-39002084)
chr3 (185-235)||(7928452-7928502)
chr3 (191-235)||(27097066-27097110)
[»] chr8 (2 HSPs)
chr8 (185-230)||(4611536-4611581)
chr8 (185-241)||(20785466-20785522)
[»] chr2 (1 HSPs)
chr2 (185-230)||(28677911-28677956)
[»] chr1 (2 HSPs)
chr1 (185-230)||(6427352-6427397)
chr1 (185-229)||(398778-398822)
[»] chr4 (1 HSPs)
chr4 (185-237)||(3712514-3712566)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33468623 - 33468385
Alignment:
Q  1 cataggactggttagtagttgtttttatgattcatgcacttcacatatgttgacannnnnnnnnnnatattatatacattatccttgcatacgcgtctgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||           |||||||||||| |||||||||||| ||||||||    
T  33468623 cataggactggttagtagttgtttttatgattcatgcacttcacatatattgacatttttttttttatattatatacactatccttgcatatgcgtctgt 33468524  T
Q  101 ctgcnnnnnnnnatgtcgtggtcaaactcttttgcctgttctcaactaaaccatgaagcaatcgggcacggacactgacgtgaccaccgctagtaatttg 200  Q
    ||||        ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  |||||||| |||||||    
T  33468523 ctgcttttttttatgtcgtggtcaaactcttttgcctgttctcaactaaactatgaagcaatcgggcacggacactgacgcgcacaccgctaataatttg 33468424  T
Q  201 aaaaaataacttaattcaatgtaattatatatgtctgtg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33468423 aaaaaataacttaattcaatgtaattatatatgtctgtg 33468385  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 13851738 - 13851788
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||| |||||||| |||||||| ||||||| ||||||||||| ||||    
T  13851738 caccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgtc 13851788  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 19040354 - 19040408
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtg 239  Q
    |||||||| |||||||| ||||| || ||||||| ||||||||||| ||||||||    
T  19040354 caccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtg 19040408  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 30866201 - 30866151
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||| |||||||| ||||| || ||||||||||||||||||| ||||    
T  30866201 caccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 26314682 - 26314641
Alignment:
Q  194 taatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||||||||| |  ||||||||||||||||||||||||    
T  26314682 taatttgaaaaaatcatataattcaatgtaattatatatgtc 26314641  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 15443706 - 15443746
Alignment:
Q  194 taatttgaaaaaataacttaattcaatgtaattatatatgt 234  Q
    |||||||| |||||||| ||||||||| |||||||||||||    
T  15443706 taatttgagaaaataacataattcaatataattatatatgt 15443746  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 35904654 - 35904698
Alignment:
Q  192 agtaatttgaaaaaataacttaattcaatgtaattatatatgtct 236  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  35904654 agtaatttgaaaaaataacttaattcagtgtaattatatgtgtct 35904698  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 8420033 - 8420071
Alignment:
Q  189 gctagtaatttgaaaaaataacttaattcaatgtaatta 227  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  8420033 gctaataatttgaaaaaataacataattcaatgtaatta 8420071  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 30502445 - 30502395
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  30502445 caccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 30502395  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 30542788 - 30542738
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||| |||||||| ||||| |||||||||| ||||||||||| ||||    
T  30542788 caccgctaataatttgagaaaatcacttaattcagtgtaattatatgtgtc 30542738  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 43208331 - 43208277
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtg 239  Q
    ||||| ||||||||||| ||||| || |||||||||||||| |||| ||||||||    
T  43208331 caccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtg 43208277  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 30136726 - 30136681
Alignment:
Q  190 ctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||||| ||||||| || |||||||||||||||||| |||||    
T  30136726 ctagtaattttaaaaaattacgtaattcaatgtaattataaatgtc 30136681  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 38749620 - 38749575
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 230  Q
    ||||| || |||||||||||||| || |||||||||||||||||||    
T  38749620 caccgataataatttgaaaaaatgacataattcaatgtaattatat 38749575  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 17593778 - 17593730
Alignment:
Q  186 accgctagtaatttgaaaaaataacttaattcaatgtaattatatatgt 234  Q
    ||||||| |||||||| ||||| || ||||||| |||||||||||||||    
T  17593778 accgctaataatttgagaaaatcacgtaattcagtgtaattatatatgt 17593730  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 13427322 - 13427362
Alignment:
Q  189 gctagtaatttgaaaaaataacttaattcaatgtaattata 229  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  13427322 gctagtaatttgaaaaaatcacttaattcaatataattata 13427362  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 42720947 - 42720897
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||| |||||||||||||| || ||||| ||||||||||||| ||||    
T  42720947 caccgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtc 42720897  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 39002044 - 39002084
Alignment:
Q  195 aatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  39002044 aatttgaaaaaatcacataattcaatgtaattatatatgtc 39002084  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 7928452 - 7928502
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    |||||||| |||||||||||||| || ||||||| ||||||||||| ||||    
T  7928452 caccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtc 7928502  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 27097110 - 27097066
Alignment:
Q  191 tagtaatttgaaaaaataacttaattcaatgtaattatatatgtc 235  Q
    ||||||||||| ||||| || ||||||||| ||||||||||||||    
T  27097110 tagtaatttgagaaaattacataattcaatttaattatatatgtc 27097066  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 4611536 - 4611581
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 230  Q
    |||||||| |||||||| |||||||| ||||||| |||||||||||    
T  4611536 caccgctaataatttgagaaaataacataattcagtgtaattatat 4611581  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 20785522 - 20785466
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctgtgct 241  Q
    |||||||| ||||||||  |||| || ||||| ||||||||||||| ||||||||||    
T  20785522 caccgctaataatttgaggaaatcacataatttaatgtaattatatgtgtctgtgct 20785466  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 28677911 - 28677956
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 230  Q
    |||||||| |||||||||||||| || ||||||| |||||||||||    
T  28677911 caccgctaataatttgaaaaaatcacataattcagtgtaattatat 28677956  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 6427352 - 6427397
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatat 230  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||    
T  6427352 caccgctaataatttgagaaaatcacataattcaatgtaattatat 6427397  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 398822 - 398778
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattata 229  Q
    |||||||| |||||||||||||| || ||||||| ||||||||||    
T  398822 caccgctaataatttgaaaaaatcacataattcagtgtaattata 398778  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 3712566 - 3712514
Alignment:
Q  185 caccgctagtaatttgaaaaaataacttaattcaatgtaattatatatgtctg 237  Q
    |||||||| |||||||| ||||| |  ||||||||||||||||||| ||||||    
T  3712566 caccgctaataatttgagaaaatcatgtaattcaatgtaattatatgtgtctg 3712514  T

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