View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11141_low_1 (Length: 341)

Name: NF11141_low_1
Description: NF11141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11141_low_1
NF11141_low_1
[»] chr2 (39 HSPs)
chr2 (7-331)||(12006274-12006598)
chr2 (7-263)||(11987643-11987899)
chr2 (28-266)||(12012729-12012964)
chr2 (7-331)||(12019044-12019391)
chr2 (53-229)||(9284392-9284569)
chr2 (25-229)||(9291686-9291890)
chr2 (7-217)||(9320758-9320968)
chr2 (53-217)||(9315795-9315959)
chr2 (11-230)||(9328363-9328581)
chr2 (58-216)||(9274277-9274435)
chr2 (53-201)||(8573728-8573876)
chr2 (53-217)||(9061361-9061522)
chr2 (58-224)||(10352878-10353044)
chr2 (27-201)||(10347553-10347730)
chr2 (58-200)||(10335649-10335791)
chr2 (99-222)||(7115917-7116040)
chr2 (53-201)||(10371626-10371777)
chr2 (25-179)||(9065788-9065942)
chr2 (53-201)||(10341141-10341292)
chr2 (126-229)||(9294915-9295019)
chr2 (276-331)||(9291563-9291618)
chr2 (276-331)||(12012999-12013054)
chr2 (7-179)||(9364442-9364614)
chr2 (276-331)||(11987937-11987992)
chr2 (278-331)||(9364242-9364295)
chr2 (276-331)||(9315644-9315699)
chr2 (276-331)||(9320596-9320651)
chr2 (53-112)||(7115847-7115906)
chr2 (276-331)||(10352735-10352790)
chr2 (276-318)||(9274200-9274242)
chr2 (92-169)||(8579746-8579823)
chr2 (25-109)||(16268952-16269036)
chr2 (276-331)||(9066083-9066138)
chr2 (289-331)||(8573993-8574035)
chr2 (276-331)||(19393261-19393321)
chr2 (276-322)||(9284657-9284703)
chr2 (301-331)||(9328225-9328255)
chr2 (276-313)||(9295107-9295144)
chr2 (276-317)||(10341038-10341079)
[»] scaffold0667 (2 HSPs)
scaffold0667 (25-217)||(4229-4418)
scaffold0667 (276-331)||(4070-4125)
[»] chr8 (2 HSPs)
chr8 (58-171)||(41966915-41967028)
chr8 (276-331)||(41967184-41967239)
[»] chr1 (9 HSPs)
chr1 (53-160)||(29453506-29453613)
chr1 (58-161)||(29467987-29468090)
chr1 (53-161)||(29423097-29423205)
chr1 (276-328)||(29453747-29453799)
chr1 (277-331)||(29443774-29443828)
chr1 (276-331)||(29422938-29422993)
chr1 (229-266)||(29443693-29443730)
chr1 (276-311)||(29468238-29468273)
chr1 (87-160)||(29443557-29443630)
[»] chr3 (2 HSPs)
chr3 (25-220)||(37462238-37462436)
chr3 (276-331)||(37462095-37462150)
[»] chr4 (3 HSPs)
chr4 (58-151)||(26574700-26574793)
chr4 (276-327)||(26574525-26574576)
chr4 (98-167)||(561009-561078)
[»] chr7 (1 HSPs)
chr7 (53-157)||(45230244-45230348)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 12006274 - 12006598
Alignment:
Q  7 attcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcc 106  Q
    |||| ||||||||||||||  ||||||| || ||||||||||| | ||||||||||||||||||||||||| |  |||| | |||  |||| ||||||||    
T  12006274 attcaagtgatggaaaaaaacttttgtttgaggtaaatcataagaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattcc 12006373  T
Q  107 taatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaag 206  Q
     |||||||||||||| |||||||||||||||||||||||||  || |||||||||||||| |||| || |||||||| ||||| | ||||||||| ||||    
T  12006374 aaatttcgatgaagcgatgatttgtgttggaagtcttgtactgccttccttccctgttgagaattgtacgaagaaggagaatcgtacaagcaagagcaag 12006473  T
Q  207 agaaggtacttcttattgattatgtataaattaatatcaattcaatggacccatcatatgttaatgtatttgaattcttattataggacaaggattctct 306  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12006474 agaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcatatgttaatgtatttgaattcttattttaggacaaggattctct 12006573  T
Q  307 aattactttgaagtctctacctttg 331  Q
    |||||||||||||||||||||||||    
T  12006574 aattactttgaagtctctacctttg 12006598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 11987643 - 11987899
Alignment:
Q  7 attcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcc 106  Q
    ||||||||||||| |||||||||||||||||| | ||||| || | ||||||||||||||||||||||||| | ||| | ||||||||||| ||||||||    
T  11987643 attcgagtgatggtaaaaaggttttgttggatcttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcc 11987742  T
Q  107 taatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaag 206  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11987743 taaattcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaag 11987842  T
Q  207 agaaggtacttcttattgattatgtataaattaatatcaattcaatggacccatcat 263  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11987843 agaaggtacttcttattgattatgtataagttaatatcaattcaatggacccatcat 11987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 12012729 - 12012964
Alignment:
Q  28 ttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgat 127  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||    
T  12012729 ttttgttggaggtaaatcataagaagctggtttggtatgatttgaagagtca---agttagttatgttgaaggaattcctaatttcgatgaagctatgat 12012825  T
Q  128 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattgatt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12012826 ttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagagcaagagaaggtacttcttattgatt 12012925  T
Q  228 atgtataaattaatatcaattcaatggacccatcatatg 266  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  12012926 atgtataagttaatatcaattcaatggacccatcatatg 12012964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 12019044 - 12019391
Alignment:
Q  7 attcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12019044 attcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcc 12019143  T
Q  107 taatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaag 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||| ||  |   | ||||| ||||| | |||| |||| ||||    
T  12019144 taatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttccttacctgctgatgataatcatacgaaggagaatcgtacaagaaagagcaag 12019243  T
Q  207 agaaggtacttcttattgattatgtataaattaatat-caattcaatggacccatca----------------------tatgttaatgtatttgaattc 283  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||                      |||||||||||||| ||||||    
T  12019244 agaaggtacttcttattgattatgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactctatgttaatgtattggaattc 12019343  T
Q  284 ttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12019344 ttattataggacaaggattctctaattactttgaagtctctacctttg 12019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 9284392 - 9284569
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||     
T  9284392 gctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgccacct 9284491  T
Q  153 tccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttc-ttattgattat 229  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| |||||||||||    
T  9284492 tccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattgattat 9284569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 9291890 - 9291686
Alignment:
Q  25 aggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctat 124  Q
    ||||||||||||| ||||||||||  | |||| |||||||||||||||||||| | ||| | |||||||||||||||||||||||||| |||||||||||    
T  9291890 aggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctat 9291791  T
Q  125 gatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattg 224  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||| | | |||||  |||| | ||||||||||||||    
T  9291790 gatttgtgttgaaagtcttctaccaccttccttccctgttgataattgtaggaagaaggagaatcatacgaacaagagaaagaaacggtacttcttattg 9291691  T
Q  225 attat 229  Q
    |||||    
T  9291690 attat 9291686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 9320968 - 9320758
Alignment:
Q  7 attcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcc 106  Q
    |||||||||||||||||||||||||||||   ||| ||  | | | |||| ||||||||||||||||||||   ||||| ||||||||||||||||||||    
T  9320968 attcgagtgatggaaaaaaggttttgttgagggtagatgctgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcc 9320869  T
Q  107 taatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaag 206  Q
    | ||||| ||| || |||| ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||| || |    
T  9320868 tgatttccatggagttatgttttgtgttggaagtcttgtcccaccttccttccctgttgataattctaagaagaaggagaatcgtacaagcaagagcatg 9320769  T
Q  207 agaaggtactt 217  Q
    |||||||||||    
T  9320768 agaaggtactt 9320758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 9315959 - 9315795
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    |||| |||||| ||| |||| |||| | ||||| | |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||     
T  9315959 gctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtaccacct 9315860  T
Q  153 tccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 217  Q
    ||||||||||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||||    
T  9315859 tccttccctgttgattattgtaggaagaaggagaatcatacaagcaagaacaagagaaggtactt 9315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 9328581 - 9328363
Alignment:
Q  11 gagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaat 110  Q
    |||||||||||||||||||||||||   ||  ||  | | | |||| ||| ||||||||| | ||||   ||||| ||||||||||||||||||||| ||    
T  9328581 gagtgatggaaaaaaggttttgttgagggtggattttgagaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcctgat 9328482  T
Q  111 ttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaa 210  Q
    ||| |||| | |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||    
T  9328481 ttccatgatgttatgttttctgttggaagtcttgtaccaccttccttccctgttgataattctaggaagaaggagaatcgtacaagcaagagcaagagaa 9328382  T
Q  211 ggtacttcttattgattatg 230  Q
    |||||||||| |||||||||    
T  9328381 ggtacttctt-ttgattatg 9328363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 9274435 - 9274277
Alignment:
Q  58 tttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 157  Q
    |||||||||||||||||||| | ||||| |||| |||| ||||||||||||| ||| ||| | |||| ||||| ||||||||| ||||||||||||||||    
T  9274435 tttggtatgatttgaagagtgaacaagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaagttttgtaccaccctcctt 9274336  T
Q  158 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtact 216  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||    
T  9274335 ccctgttgataattctaggaagaaggagaatcatacaagcaagagcaagaaaaggtact 9274277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 8573728 - 8573876
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||   ||| ||||||| |||||||||||||||||||||||||     
T  8573728 gctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtaccacct 8573827  T
Q  153 tccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 201  Q
    | ||||||||||||||||| ||||||| ||| ||||  | |||||||||    
T  8573828 ttcttccctgttgataattgtaggaaggaggagaattgtacaagcaaga 8573876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 9061361 - 9061522
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    |||| ||||||||||| | |||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||| ||||     
T  9061361 gctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattcctaattttgatgaagctatgttttatgttggaagtctcgtatcacct 9061460  T
Q  153 tccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 217  Q
    | ||||||||||||||   || | ||||||| ||||| | |||||||||||||||||||||||||    
T  9061461 ttcttccctgttgata---cttgtaagaaggagaatcgtacaagcaagaccaagagaaggtactt 9061522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 10353044 - 10352878
Alignment:
Q  58 tttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 157  Q
    |||||||||||||| ||||| | ||||| ||||||||| ||| ||||| |||||| |||||  ||||||||||||||||||||||||||||||| | |||    
T  10353044 tttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccaccttactt 10352945  T
Q  158 ccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttcttattg 224  Q
    |||||||||||||  ||||||| ||| ||||| | ||||| ||| | ||| ||||||||||||||||    
T  10352944 ccctgttgataatcgtaggaagcaggagaatcctacaagcgagagcgagaaaaggtacttcttattg 10352878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 10347730 - 10347553
Alignment:
Q  27 gttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcct---aatttcgatgaagcta 123  Q
    ||||||||||| ||| | ||||  | |||| |||||||||||||||||||| | ||| | |||||||||||||||||||||   ||| |  ||||| |||    
T  10347730 gttttgttggaggtacaacataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctcctaatatgaatgaaacta 10347631  T
Q  124 tgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 201  Q
    || ||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  10347630 tgttttgtgttggaagtcttgtcccaccttccttccctgttgataatcgtaggaagaaggagaatcatccaagcaaga 10347553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 10335791 - 10335649
Alignment:
Q  58 tttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 157  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||  |||| |||||    
T  10335791 tttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtcttgtttcaccttcctt 10335692  T
Q  158 ccctgttgataattctaggaagaaggggaatcattcaagcaag 200  Q
     ||||||||||||  ||||||||||  ||||| | ||||||||    
T  10335691 acctgttgataatcgtaggaagaagcagaatcgtacaagcaag 10335649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 7115917 - 7116040
Alignment:
Q  99 ggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagca 198  Q
    ||||||| ||||||  ||| |||| |||||||| ||| ||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  7115917 ggaattcgtaatttgaatggagctttgatttgttttgaaagccttgtaccaccttccttccctgttgataattgtaggaagaaggagaatcatacaagca 7116016  T
Q  199 agaccaagagaaggtacttcttat 222  Q
    ||| ||||||||||||||||||||    
T  7116017 agagcaagagaaggtacttcttat 7116040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 10371777 - 10371626
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccac-- 150  Q
    |||| |||||||||||||||||||| | ||||| |||||||||||||||| | ||||||| ||||| |||||| |||||||||| |||||||||||||      
T  10371777 gctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacca 10371678  T
Q  151 cctcctt-ccctgttgataattctaggaagaaggggaatcattcaagcaaga 201  Q
    || |||| || ||||||||||  ||||||||||| ||||||| |||||||||    
T  10371677 cccccttaccttgttgataatggtaggaagaaggagaatcatacaagcaaga 10371626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 9065788 - 9065942
Alignment:
Q  25 aggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctat 124  Q
    ||||||||||||| ||| ||||| | | |||  |||||||||||||||||||| | ||||| | ||||||||||||| |||||||||   ||||  || |    
T  9065788 aggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttcctaattggaatgacactgt 9065887  T
Q  125 gatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaag 179  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||| |||||||    
T  9065888 gatttgtgttgaaagtcttgtaccaacttccttccctgttgataattgtaggaag 9065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 10341292 - 10341141
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttat---gttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtacca 149  Q
    |||| |||||||||||||| ||||| | ||||| ||||||   ||||||||||||||| |||| ||||| |||||||| |||||||||||| | ||||||    
T  10341292 gctgttttggtatgatttggagagtgaacaagttagttattatgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtacca 10341193  T
Q  150 ccctccttccctgttgataattctaggaagaaggggaatcattcaagcaaga 201  Q
    || | |||||||||||| |||  ||||||||||| ||||| |||||||||||    
T  10341192 cctttcttccctgttgacaatcgtaggaagaaggagaatccttcaagcaaga 10341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 9294915 - 9295019
Alignment:
Q  126 atttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttc-ttattg 224  Q
    |||| ||||| |||||| ||| |||| ||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||||| ||||||    
T  9294915 atttatgttgaaagtctcgtagcaccttccttccctgttgataattctagtaagaaggagaatcgtttaagcaagagcaagagaaggtacttctttattg 9295014  T
Q  225 attat 229  Q
    |||||    
T  9295015 attat 9295019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 9291618 - 9291563
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291618 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 9291563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 12012999 - 12013054
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012999 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 12013054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 9364614 - 9364442
Alignment:
Q  7 attcgagtgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcc 106  Q
    |||||||||||||||| |||||||| |||||  || ||| ||| | |||| ||||||| ||| | |||||| |  | || | |  ||||  |||||||||    
T  9364614 attcgagtgatggaaagaaggttttattggaaatagatcgtaagaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcc 9364515  T
Q  107 taatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaag 179  Q
    |||| |  |||||||||||||||||||||| |||||||||||||| || || ||||||||||||| |||||||    
T  9364514 taatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttctttacctgttgataattgtaggaag 9364442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 11987937 - 11987992
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  11987937 ttgaattcctattataggacaaggattttctaattactttgaagtctctacctttg 11987992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 9364295 - 9364242
Alignment:
Q  278 gaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  9364295 gaattcttattataggacaaggagtctctaattactttgaagtctatacctttg 9364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 9315699 - 9315644
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||    
T  9315699 ttgaattcttattataggacaaggattccctaattactttaaattctctacctttg 9315644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 9320651 - 9320596
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  9320651 ttgaatttttattatcggacaaggatactctaattactttgaagtctctacctttg 9320596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 7115847 - 7115906
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaattt 112  Q
    ||||||||||||||||||||||||  | ||||| |||| |||||||||||||||||||||    
T  7115847 gctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 10352790 - 10352735
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| ||||||||    
T  10352790 ttgaattcttatcataggataaggattctctaattactttgacgtctttacctttg 10352735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 9274242 - 9274200
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaa 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9274242 ttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 8579746 - 8579823
Alignment:
Q  92 tgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgataa 169  Q
    |||| ||||||||||||||||| ||||| ||||||||| ||||||||  ||| ||||||| ||||| ||| |||||||    
T  8579746 tgttcaaggaattcctaatttcaatgaaactatgatttatgttggaacccttctaccaccttccttgcctattgataa 8579823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 16269036 - 16268952
Alignment:
Q  25 aggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaa 109  Q
    ||||||||||||| ||  || |||| | | || |||||||||||||||||||| | | ||| |||||||||||||||||||||||    
T  16269036 aggttttgttggacgtgcattataagaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattcctaa 16268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 9066083 - 9066138
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||| |||||| |||||| || |||||||||||||||||||||| ||||||||||    
T  9066083 ttgaagtcttatcataggataaagattctctaattactttgaagtttctacctttg 9066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 8573993 - 8574035
Alignment:
Q  289 ataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  8573993 ataggacaaggattctctaattactttgaagtttatacctttg 8574035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 19393261 - 19393321
Alignment:
Q  276 ttgaattcttattataggacaaggatt-----ctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||| |||||||     ||||||||||||||||||||| |||||||    
T  19393261 ttgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacctttg 19393321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 9284657 - 9284703
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtct 322  Q
    ||||||||||||||| ||||||||| |||| ||||||||||| ||||    
T  9284657 ttgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 9328255 - 9328225
Alignment:
Q  301 ttctctaattactttgaagtctctacctttg 331  Q
    |||||||||||||||||||||||||||||||    
T  9328255 ttctctaattactttgaagtctctacctttg 9328225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 9295107 - 9295144
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattact 313  Q
    ||||||||||||||||||||| || |||||||||||||    
T  9295107 ttgaattcttattataggacaggggttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 10341079 - 10341038
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttga 317  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  10341079 ttgaattcttatcataggataaggattctctaattaccttga 10341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 4418 - 4229
Alignment:
Q  25 aggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctat 124  Q
    ||||||||||||| ||  ||||||| | |||| |||||||||||||||||| | | ||||| |||||||   ||| ||||||| ||||| ||| |||||     
T  4418 aggttttgttggaggtgcatcataagaagctgttttggtatgatttgaagactgaacaagttagttatg---aagaaattcctgatttcaatggagctaa 4322  T
Q  125 gatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtactt 217  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||| || |||||| ||||| |||||||||    
T  4321 gatttgtgttggaagtcttgtaccaccttcctttcctgttgataattctagtaagaaggagaatcatacatgcaagagcaagaaaaggtactt 4229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 4125 - 4070
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  4125 ttgaattcttattataggaaaaggattctataattactttgaattctctacctttg 4070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 41966915 - 41967028
Alignment:
Q  58 tttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 157  Q
    |||||||||||||||||||| | ||| | | |||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  41966915 tttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccaccttcctt 41967014  T
Q  158 ccctgttgataatt 171  Q
    |||||||| |||||    
T  41967015 ccctgttgttaatt 41967028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 41967184 - 41967239
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||| || ||||||||    
T  41967184 ttgaattcttattataggataactattctctaattacttcgaaggctttacctttg 41967239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 29453506 - 29453613
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    |||| ||||||||||| | |||||| | ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||     
T  29453506 gctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgccacct 29453605  T
Q  153 tccttccc 160  Q
    ||||||||    
T  29453606 tccttccc 29453613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 29467987 - 29468090
Alignment:
Q  58 tttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctcctt 157  Q
    ||||||||||| | |||||| | || || | ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  29467987 tttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtaccaccttcctt 29468086  T
Q  158 ccct 161  Q
    ||||    
T  29468087 ccct 29468090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 29423205 - 29423097
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    |||| ||||||||||| | |||||| | ||||| |||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||     
T  29423205 gctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatcacct 29423106  T
Q  153 tccttccct 161  Q
    |||||||||    
T  29423105 tccttccct 29423097  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 29453747 - 29453799
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacct 328  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29453747 ttgaattcttattatagaacaaggattctctaattactttgaagtctctacct 29453799  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 29443774 - 29443828
Alignment:
Q  277 tgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  29443774 tgaattcttatcataggacaaggattctctaattattttgaagtctctacctttg 29443828  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 29422993 - 29422938
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  29422993 ttgaattcttattatatgacaatgattctctaattattttgaagtctctacctttg 29422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 29443693 - 29443730
Alignment:
Q  229 tgtataaattaatatcaattcaatggacccatcatatg 266  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29443693 tgtataagttaatatcaattcaatggacccatcatatg 29443730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 29468238 - 29468273
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaatta 311  Q
    |||||||||||||||||||||| |||||||||||||    
T  29468238 ttgaattcttattataggacaatgattctctaatta 29468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 29443557 - 29443630
Alignment:
Q  87 agttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 160  Q
    ||||||||||||||||||||||   | ||| | || || |||||||||||||||||||||| ||| || |||||    
T  29443557 agttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttctttccc 29443630  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 37462436 - 37462238
Alignment:
Q  25 aggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaa---gc 121  Q
    ||||||||||| | ||| |||| |  | |||| |||||||||||| ||||||| | ||||| |||||| |||||||| ||||||||||  ||| |   ||    
T  37462436 aggttttgttgaaggtagatcacagaaagctgttttggtatgattggaagagtgaacaagttagttatattgaaggagttcctaatttgaatggagctgc 37462337  T
Q  122 tatgatttgtgttggaagtcttgtaccaccctccttccctgttgataattctaggaagaaggggaatcattcaagcaagaccaagagaaggtacttctt 220  Q
    |||||||||||||| |||||||||| ||||  | |||||||||||||||| ||||||||||| | |     ||||||||| |||||||||||| |||||    
T  37462336 tatgatttgtgttgaaagtcttgtatcacctcctttccctgttgataattgtaggaagaaggaggacaggacaagcaagagcaagagaaggtatttctt 37462238  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 37462150 - 37462095
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacctttg 331  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37462150 ttgaattcttgttataggacaaggattctctaattactttgaagtctctacctttg 37462095  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 26574793 - 26574700
Alignment:
Q  58 tttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccacc 151  Q
    |||||||||||||| ||||| | ||||| ||| || || ||| |  || | |||| ||||| ||||||||||||||||||||||||||||||||    
T  26574793 tttggtatgatttggagagtaatcaagttagtcattttcaagaagatcttgatttggatgacgctatgatttgtgttggaagtcttgtaccacc 26574700  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 26574576 - 26574525
Alignment:
Q  276 ttgaattcttattataggacaaggattctctaattactttgaagtctctacc 327  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||| ||||    
T  26574576 ttgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 561078 - 561009
Alignment:
Q  98 aggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccctgttgat 167  Q
    ||||||||||||| || || ||| |||||||| ||||||||| ||| ||||||| ||||| ||| |||||    
T  561078 aggaattcctaatatcaataaagttatgatttatgttggaagccttctaccaccttccttgcctattgat 561009  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 45230348 - 45230244
Alignment:
Q  53 gctggtttggtatgatttgaagagtcagcaagtcagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtaccaccc 152  Q
    |||| ||||||||||||| |||||| | ||||| | | ||||| |||||||||||| |||| ||||||  |||||||||| || ||| |||||| ||||     
T  45230348 gctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaagccttgtatcacca 45230249  T
Q  153 tcctt 157  Q
    |||||    
T  45230248 tcctt 45230244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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