View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11141_low_2 (Length: 333)
Name: NF11141_low_2
Description: NF11141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11141_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 43059790 - 43060116
Alignment:
| Q |
1 |
ttcagaaacacaaatgattattctatagctgatctatttattgatgaagaagatgtaatttcgttttctcctccaaatgtctcataannnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43059790 |
ttcagaaacacaaatgattattctatagctgatctatttatagatgaagaagatgtaatttcgttttctcctccaaatgtctcataatttttaatttttt |
43059889 |
T |
|
| Q |
101 |
naacccttgataaatcaagattttagacc-tctgtaatggtggatgtttcacctatttaacatgcaccatctttcttcacttttcgtagggtccaaatgt |
199 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43059890 |
taacccttgataaatcaagattttagaccctcaataatggtggatgtttcacctatttaacatgcaccatctttcttcacttttcgtagggtccaaatgt |
43059989 |
T |
|
| Q |
200 |
ctcctttgacatgtgtttgggacaaaattttcacaaattggttgctcttcatatcttcaatgtacttgctctcccttgcttccataacttctatacataa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
43059990 |
ctcctttgacatgtgtttgggacaaaattttcacaaattggttgctcttcatatcttcaatgtacttgctctgccttgcttccataacttctatatataa |
43060089 |
T |
|
| Q |
300 |
gatgccttttcctccatcattcctatg |
326 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
43060090 |
gatgccttttcctccatcattcctatg |
43060116 |
T |
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