View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11141_low_3 (Length: 316)
Name: NF11141_low_3
Description: NF11141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11141_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 30782718 - 30782425
Alignment:
| Q |
8 |
agaagcaaaggagcaaacgcagaaaacatgacccatccattgtatcagttatccagattcctagtgatcgcgtaaacggctgacatataagtaaacacca |
107 |
Q |
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| T |
30782718 |
agaagcaaaggagcaaacgcagaaaacatgacccatccattgtatcagttatacagattcctagtgatcgcgtaaacggctgacatataagtaaacacca |
30782619 |
T |
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| Q |
108 |
ttgaaagtgttgcaaaccatattgccaattggaaaggaagatttagatacataaacttttggattatttaatggaa-gtgtaatatgaatcgatctcaat |
206 |
Q |
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| T |
30782618 |
ttgaaagtgttgcaaaccatatcgccaattggaaaggaagatttagatacataaacttttggattatttaatggaaggtgtaatatgaatcgatctcaat |
30782519 |
T |
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| Q |
207 |
ggatgacttagatacattaatgtgtgtaattttgtgtttcttaaatacaagaaattgatctgaaacttcacaaacttcttaatcacttccaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30782518 |
ggatgacttagatacattaatgtgtgtaattttgtgtttcttaaatacaagaaattgatctgaaacttcacaaacttcttaatcacttccaatg |
30782425 |
T |
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