View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11141_low_5 (Length: 286)
Name: NF11141_low_5
Description: NF11141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11141_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 47234623 - 47234886
Alignment:
| Q |
8 |
aagcaaaggcaaaagtctttatatgcaaaacattttcagtatggtttggtttggtgggttaggacaacttctgacgagtctatgaaaaaggaaaataggt |
107 |
Q |
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| T |
47234623 |
aagcaaagttaaaagtctttataagcaaaacattttcagtatggtttggcttggtgggttaggacagtttctgacgagtctatgaaaaaggaaaataggt |
47234722 |
T |
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| Q |
108 |
ttgtgtttttatggcggcttacttacaggtggtgtatgcagctactgcctaactagctagggctagctcatcaggtagaaatgaaatgacagacaaaaat |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47234723 |
ttgtgtttttatggcggcttacttacaggcggtgtatgcagctactgcctaactagctagggctagctcatcaggtagaaatgaaatgacagacaaaaat |
47234822 |
T |
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| Q |
208 |
gctttgaagttcaaaatcctaactaactagcttgtgtagctccccaaagccaaaccaagatact |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47234823 |
gctttgaagttcaaaatcctaactaactagcttgtgtagctccccaaagccaaaccaagatact |
47234886 |
T |
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