View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_high_11 (Length: 511)
Name: NF11142_high_11
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 8935762 - 8935524
Alignment:
| Q |
19 |
acatagatttcaagtagcatgagataagggccgtgtgccaatcattagcgatgaaaatgacatcttcgcctgcataacgaaaatcaaaacatcgtgctta |
118 |
Q |
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| T |
8935762 |
acatagatttcaagtagcatgagataagggccgtgtgccaatcattagcgatgaaaatgacatcttcgcctgcataacgaaaatcaaaacatcgtgctta |
8935663 |
T |
|
| Q |
119 |
aatgatcttcagctagttgttttcaagaatatcatttatgactatagtccataccgtatggtcctgagaaatatttattgctcgtgagattcagaaccct |
218 |
Q |
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| T |
8935662 |
tatgatcttcagctagttgttttcaagaatatcatttatgactatagtccataccgtatggtcctgagaaatatttattgctcgtgagattcagaaccct |
8935563 |
T |
|
| Q |
219 |
tgctgcttccagagctgcctgttaagattaattccaagg |
257 |
Q |
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| T |
8935562 |
tgctgcttccagagctgcctgttaagattaattccaagg |
8935524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 318 - 501
Target Start/End: Complemental strand, 8935463 - 8935280
Alignment:
| Q |
318 |
atggaaacacatgctactattacatgtttagctttataaaaaggtgtaccagttgatacacgacattgatatatgcctaatgtgaaactacgatttactg |
417 |
Q |
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| T |
8935463 |
atggaagcacatgctactattacatgtttagctttataaaaaggtgtaccagttgatacacgacattgatatatgcctaatgtgaaactacgatttactg |
8935364 |
T |
|
| Q |
418 |
ttaaatgtcattgctgctcaataaatgaacacaacacattataaattgtaactaatgtagattctttccacaaatttctctctg |
501 |
Q |
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| T |
8935363 |
ttaaatgtcattgctgctcaataaatgaacacaacacattataaattgtaactaatgtagattctttccacaaatttctctctg |
8935280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 469
Target Start/End: Complemental strand, 4765307 - 4765208
Alignment:
| Q |
368 |
agttgatacacgacattgatatatgcctaatgtgaaactacgatttactgttaaatgtcattgctgctcaataaatgaacacaacacattataaattgta |
467 |
Q |
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| T |
4765307 |
agttgatacacaacatcgatgtatgtctaatgcgaaactgtgatttacagttaaacgtcattgctaaccaataactga--acaacaaattataatttgta |
4765210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 31719630 - 31719694
Alignment:
| Q |
433 |
gctcaataaatgaacacaacacattataaattgtaactaatgtagattctttccacaaatttctc |
497 |
Q |
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| T |
31719630 |
gctcaataaatgaacacaacaaattataactcataactagcgtagattctttcaacaaatttctc |
31719694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 35045650 - 35045596
Alignment:
| Q |
417 |
gttaaatgtcattgctgctcaataaatgaacacaacacattataaattgtaacta |
471 |
Q |
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| T |
35045650 |
gttaaatgttgttgttgctcaataattgaacacaacaaattataaatcgtaacta |
35045596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 4974303 - 4974415
Alignment:
| Q |
368 |
agttgatacacgacattgatatatgcctaatgtgaaactacgatttactgttaaatgtcattgctgctcaataaatgaacacaacacattataaattgta |
467 |
Q |
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|||||||||| ||||| || |||| |||||| | ||||||||||||| ||||| || ||||| | ||||| |||||||||| ||||||||| ||| |
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| T |
4974303 |
agttgatacataacattaatgtatgtctaatgcaatactacgatttactcttaaacatcgatgctgttaaataaccgaacacaacaaattataaatcgta |
4974402 |
T |
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| Q |
468 |
actaatgtagatt |
480 |
Q |
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| T |
4974403 |
actaacgtagatt |
4974415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 4992211 - 4992323
Alignment:
| Q |
368 |
agttgatacacgacattgatatatgcctaatgtgaaactacgatttactgttaaatgtcattgctgctcaataaatgaacacaacacattataaattgta |
467 |
Q |
| |
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|||||||||| ||||| || |||| |||||| | ||||||||||||| ||||| || ||||| | ||||| |||||||||| ||||||||| ||| |
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| T |
4992211 |
agttgatacataacattaatgtatgtctaatgcaatactacgatttactcttaaacatcgatgctgttaaataaccgaacacaacaaattataaatcgta |
4992310 |
T |
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| Q |
468 |
actaatgtagatt |
480 |
Q |
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| T |
4992311 |
actaacgtagatt |
4992323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 501
Target Start/End: Original strand, 15250467 - 15250540
Alignment:
| Q |
428 |
ttgctgctcaataaatgaacacaacacattataaattgtaactaatgtagattctttccacaaatttctctctg |
501 |
Q |
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| T |
15250467 |
ttgctgctcaataacttaagccaacaaattataaaccgtaactaaagtagattcttccgacaagtttctctctg |
15250540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 470
Target Start/End: Original strand, 28858811 - 28858911
Alignment:
| Q |
367 |
cagttgatacacgacattgatatatgcctaatgtgaaactacgatttactgttaaatgtcattgctgctcaataaatgaacacaacacattataaattgt |
466 |
Q |
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||||||||||||| |||||||||||| |||||||| ||| |||||| | ||||| | |||||||| ||| |||||||| |||| ||||| |||||| |
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| T |
28858811 |
cagttgatacacggcattgatatatg--taatgtgatactgtgatttattcttaaacgcggttgctgctaaattaatgaacataacagattat-aattgt |
28858907 |
T |
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| Q |
467 |
aact |
470 |
Q |
| |
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|||| |
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|
| T |
28858908 |
aact |
28858911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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