View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_high_13 (Length: 502)
Name: NF11142_high_13
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 35165228 - 35165581
Alignment:
| Q |
10 |
cagagaatataaaatatagtacagtggtacgtgagcatatgttcgttcgtttcgtcctgataatattttcttgagaaaaatccccatgtgcttattttgt |
109 |
Q |
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| T |
35165228 |
cagagaatataaaatatagtacagtggtacgtgagcatatgttcgttcgtttcgtcctgataatattttcttgagaaaattccccatgtgcttattttgt |
35165327 |
T |
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| Q |
110 |
cggctgtgtgaaggcacgacctttcttattgatcaacatatacatcatactagattttttattaaacaaaagagaaatgattttaagcatatattaccaa |
209 |
Q |
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| T |
35165328 |
cggctgtgtgaaggcacgacctttcgtattgatcaacatatacatcattctagattttttattaaacaaaagagaaatgattttaagcatatattaccaa |
35165427 |
T |
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| Q |
210 |
ctctatgtatatatgagtattttcgtaaaagcaaaag-nnnnnnnngcttcaaaacaccacgtcaatcgttgacaaagttatcacaaaagtgatatcaat |
308 |
Q |
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| T |
35165428 |
ctctatgtatatatgagtattttcgtaaaagcaaaagaaaaaaaaagcttcagaacactacgtcaatcgttgacaaagttatcacaaaagtgatatcaat |
35165527 |
T |
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| Q |
309 |
atatcatagctctaaattttgatccattttaaacaaaatgcaatgatgaaacaa |
362 |
Q |
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| T |
35165528 |
atatcatagctctaaattttgatccattttaaacaaaaagcaatgatgaaacaa |
35165581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 434 - 486
Target Start/End: Original strand, 35165638 - 35165690
Alignment:
| Q |
434 |
aaaatataaccaaattttaggagttgggcaacatttatcttttacgatcaaag |
486 |
Q |
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| T |
35165638 |
aaaatataaccaaattttaggagttgggcaacatttatcttttacgatcaaag |
35165690 |
T |
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