View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_high_15 (Length: 494)
Name: NF11142_high_15
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 33642718 - 33642248
Alignment:
| Q |
14 |
agatgatcgagtctaaaatgtacataatacgacgatatgattatatactaggctaa---------ggaaagggaataaggagaaaagaacaagatagata |
104 |
Q |
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| T |
33642718 |
agatgatcgagtctaaaatgtacataatacgacgatatgattatatactaggctaatatatataaggaaagggaataaggagaaaagaacaagatagata |
33642619 |
T |
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| Q |
105 |
acataggatgattgatacatttgcgccatatgatgtatatataaaagctgaagattttctacatgagtagtatctgcggttcctaactagagcagaagaa |
204 |
Q |
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| T |
33642618 |
acataggatgattgatacatttgcgccatatgatgtatata--aaagctgaagattttctacatgagtagtatctgcggttcctaactagagcagaagaa |
33642521 |
T |
|
| Q |
205 |
gctgcacctgctcttcaagaatttcgaagggttctgatctggtgagtgcatgaatttgcagttaggacaggcaggagaagacttgcatatcataaccaac |
304 |
Q |
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| T |
33642520 |
gctgcacctgctcttcaagaatttcgaagggttctgatctggtgagtgcatgaatttgcagttaggacaggcaggagaagacttgcatatcataaccaac |
33642421 |
T |
|
| Q |
305 |
atgtgacactgcatgcaaactgtagcaaccatctctttgtaatctccttcggttgtcgacaaccacgactgagaaccgtttaaaccacctgaatctttct |
404 |
Q |
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| T |
33642420 |
atgtgacactgcatgcaaactgtagcaaccatctctttgtaatctccttcggttgtcgacaaccacgactgagaaccgtttaaaccacctgaatctttct |
33642321 |
T |
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| Q |
405 |
taaacttgcttgattcaatacaaagatcatcatgttctgacaaactcttgggagaattaccagaattcttctt |
477 |
Q |
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| T |
33642320 |
taaacttgcttgattcaatacaaagatcatcatgttctgacaaactcttgggagaattaccagaattcttctt |
33642248 |
T |
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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 348
Target Start/End: Complemental strand, 26416674 - 26416538
Alignment:
| Q |
215 |
ctcttcaagaatttcgaagggttctgatctggtgag---tgcatgaatttgcagttaggacaggcaggagaagacttgcatatcataaccaacatgtgac |
311 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||| | |||||| || ||||| | ||| ||||||||||||| |
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| T |
26416674 |
ctcttcaaaaatttggaagggttctgatctggtggtggatgcatgaatttgcaattaggacaagaaggagatgatttgcaaagcattaccaacatgtgac |
26416575 |
T |
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| Q |
312 |
actgcatgcaaactgtagcaaccatctctttgtaatc |
348 |
Q |
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| T |
26416574 |
acttcatacaaactgttgcaatcatttctttgtaatc |
26416538 |
T |
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