View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_18 (Length: 472)

Name: NF11142_high_18
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_18
NF11142_high_18
[»] chr7 (34 HSPs)
chr7 (181-228)||(34590565-34590612)
chr7 (181-268)||(16564885-16564978)
chr7 (181-268)||(16600684-16600777)
chr7 (181-267)||(29646056-29646148)
chr7 (181-267)||(33833942-33834034)
chr7 (181-267)||(33855683-33855775)
chr7 (181-267)||(16565090-16565182)
chr7 (181-267)||(16600480-16600572)
chr7 (193-228)||(36492575-36492610)
chr7 (175-267)||(4258216-4258316)
chr7 (181-223)||(7832983-7833025)
chr7 (181-223)||(43167913-43167955)
chr7 (181-228)||(4258020-4258067)
chr7 (191-267)||(10903514-10903596)
chr7 (181-228)||(33834192-33834239)
chr7 (193-228)||(37272077-37272112)
chr7 (181-228)||(47856011-47856058)
chr7 (193-223)||(257299-257329)
chr7 (193-223)||(1661223-1661253)
chr7 (193-223)||(7135275-7135305)
chr7 (181-223)||(9379042-9379084)
chr7 (196-226)||(22206313-22206343)
chr7 (196-226)||(22228396-22228426)
chr7 (193-223)||(28910074-28910104)
chr7 (181-223)||(29645857-29645899)
chr7 (193-223)||(41670625-41670655)
chr7 (193-223)||(43288574-43288604)
chr7 (193-223)||(43384312-43384342)
chr7 (194-228)||(44760540-44760574)
chr7 (187-228)||(42556124-42556165)
chr7 (195-223)||(6813317-6813345)
chr7 (192-228)||(31149094-31149130)
chr7 (192-228)||(31167386-31167422)
chr7 (195-223)||(40703445-40703473)
[»] chr4 (30 HSPs)
chr4 (181-228)||(56511334-56511381)
chr4 (181-228)||(53863942-53863989)
chr4 (181-228)||(56511541-56511588)
chr4 (181-267)||(10390495-10390587)
chr4 (181-228)||(14594877-14594924)
chr4 (181-228)||(22865806-22865853)
chr4 (181-228)||(41743573-41743620)
chr4 (194-228)||(27048170-27048204)
chr4 (181-223)||(50307318-50307360)
chr4 (180-228)||(10390695-10390743)
chr4 (181-267)||(14945135-14945227)
chr4 (181-228)||(14115765-14115812)
chr4 (193-228)||(27048440-27048475)
chr4 (193-228)||(28085731-28085766)
chr4 (193-228)||(52214652-52214687)
chr4 (193-228)||(52827264-52827299)
chr4 (193-223)||(990589-990619)
chr4 (193-223)||(991079-991109)
chr4 (193-223)||(21497715-21497745)
chr4 (193-223)||(21498229-21498259)
chr4 (193-223)||(22867126-22867156)
chr4 (193-223)||(29669395-29669425)
chr4 (193-223)||(29669710-29669740)
chr4 (193-223)||(45426968-45426998)
chr4 (193-223)||(45427284-45427314)
chr4 (193-223)||(48843049-48843079)
chr4 (193-223)||(51469523-51469553)
chr4 (193-223)||(53740224-53740254)
chr4 (193-226)||(32987503-32987536)
chr4 (193-226)||(43972394-43972427)
[»] chr3 (30 HSPs)
chr3 (181-228)||(35011901-35011948)
chr3 (181-223)||(50203877-50203919)
chr3 (193-267)||(12799872-12799942)
chr3 (181-267)||(35011649-35011741)
chr3 (181-228)||(53761418-53761465)
chr3 (181-267)||(26926900-26926991)
chr3 (180-221)||(44461332-44461373)
chr3 (181-267)||(19984433-19984513)
chr3 (181-228)||(29763716-29763763)
chr3 (181-228)||(35015522-35015569)
chr3 (181-228)||(39269082-39269129)
chr3 (181-228)||(44367815-44367862)
chr3 (193-223)||(13769323-13769353)
chr3 (193-223)||(21750517-21750547)
chr3 (193-223)||(24860093-24860123)
chr3 (193-223)||(27219371-27219401)
chr3 (193-223)||(31563731-31563761)
chr3 (193-223)||(31564035-31564065)
chr3 (193-223)||(34715487-34715517)
chr3 (193-223)||(38300784-38300814)
chr3 (193-223)||(43101403-43101433)
chr3 (193-223)||(44573681-44573711)
chr3 (193-223)||(44573978-44574008)
chr3 (193-222)||(10453735-10453764)
chr3 (193-222)||(47833694-47833723)
chr3 (193-226)||(49477366-49477399)
chr3 (182-223)||(54369081-54369122)
chr3 (231-267)||(10758844-10758880)
chr3 (193-221)||(14170031-14170059)
chr3 (231-267)||(42637823-42637859)
[»] chr1 (25 HSPs)
chr1 (181-228)||(38871175-38871222)
chr1 (181-228)||(38870969-38871016)
chr1 (181-259)||(6237988-6238065)
chr1 (181-263)||(22826765-22826853)
chr1 (181-228)||(6238357-6238404)
chr1 (181-228)||(10017348-10017395)
chr1 (181-228)||(29413385-29413432)
chr1 (181-267)||(47377827-47377922)
chr1 (192-228)||(35892058-35892094)
chr1 (181-225)||(45982371-45982415)
chr1 (193-223)||(2697363-2697393)
chr1 (193-223)||(4022157-4022187)
chr1 (193-223)||(17419829-17419859)
chr1 (193-223)||(19937075-19937105)
chr1 (182-228)||(20429256-20429302)
chr1 (193-223)||(20735797-20735827)
chr1 (193-223)||(31305753-31305783)
chr1 (193-223)||(36326948-36326978)
chr1 (181-223)||(37600914-37600956)
chr1 (193-223)||(38474325-38474355)
chr1 (193-223)||(43423321-43423351)
chr1 (193-223)||(45403482-45403512)
chr1 (193-221)||(20735566-20735594)
chr1 (181-221)||(21538954-21538994)
chr1 (195-223)||(22892467-22892495)
[»] chr6 (9 HSPs)
chr6 (181-228)||(25999060-25999107)
chr6 (181-228)||(26098791-26098838)
chr6 (181-268)||(25998808-25998901)
chr6 (181-268)||(26098333-26098426)
chr6 (181-228)||(26098585-26098632)
chr6 (193-223)||(1744874-1744904)
chr6 (193-223)||(8144059-8144089)
chr6 (193-223)||(10418370-10418400)
chr6 (193-225)||(29742468-29742500)
[»] chr8 (17 HSPs)
chr8 (181-267)||(43901037-43901129)
chr8 (181-227)||(25186562-25186608)
chr8 (181-223)||(39588104-39588146)
chr8 (181-252)||(41456342-41456416)
chr8 (181-228)||(3895168-3895215)
chr8 (181-228)||(15968206-15968253)
chr8 (193-228)||(34248114-34248149)
chr8 (193-228)||(34248396-34248431)
chr8 (193-228)||(36997203-36997238)
chr8 (193-223)||(18905898-18905928)
chr8 (193-223)||(20298548-20298578)
chr8 (193-223)||(21085180-21085210)
chr8 (171-267)||(22188927-22189018)
chr8 (193-223)||(32931443-32931473)
chr8 (181-223)||(39587878-39587920)
chr8 (193-226)||(21653843-21653876)
chr8 (175-267)||(41456521-41456607)
[»] chr5 (10 HSPs)
chr5 (181-267)||(39268010-39268102)
chr5 (181-267)||(39268218-39268310)
chr5 (181-221)||(18107877-18107917)
chr5 (181-223)||(1028113-1028155)
chr5 (192-228)||(2716380-2716416)
chr5 (181-266)||(18873214-18873305)
chr5 (181-228)||(2716583-2716630)
chr5 (193-267)||(28156028-28156102)
chr5 (196-226)||(29396378-29396408)
chr5 (193-226)||(48343-48376)
[»] chr2 (19 HSPs)
chr2 (181-267)||(39386662-39386754)
chr2 (181-267)||(27545136-27545228)
chr2 (181-228)||(8044565-8044613)
chr2 (193-225)||(15061297-15061329)
chr2 (180-228)||(22447342-22447390)
chr2 (193-228)||(10849523-10849558)
chr2 (171-223)||(30156250-30156304)
chr2 (193-223)||(3976503-3976533)
chr2 (181-223)||(10536949-10536991)
chr2 (193-223)||(11969094-11969124)
chr2 (181-227)||(17264995-17265041)
chr2 (193-223)||(17509151-17509181)
chr2 (193-223)||(21213917-21213947)
chr2 (193-223)||(21214233-21214263)
chr2 (193-223)||(23054368-23054398)
chr2 (193-223)||(42768366-42768396)
chr2 (193-223)||(43195826-43195856)
chr2 (194-223)||(43169284-43169313)
chr2 (171-268)||(29676143-29676245)
[»] scaffold0005 (1 HSPs)
scaffold0005 (181-228)||(222454-222501)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 34590612 - 34590565
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34590612 aaaaccggttcataaggtgaggagtgcctcctctttataaactcttat 34590565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 16564978 - 16564885
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaatag 268  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||| |      |||||||||| ||||||||| || |||||| |||||||    
T  16564978 aaaaccggttcataaggtgaggagtgcctcctatttataaactcttattaagagtcttatctatccgatgtgggacttgggtttttcccaatag 16564885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 16600684 - 16600777
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaatag 268  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||| |      |||||||||| ||||||||| || |||||| |||||||    
T  16600684 aaaaccggttcataaggtgaggagtgcctcctatttataaactcttattaagagtcttatctatccgatgtgggacttgggtttttcccaatag 16600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 29646148 - 29646056
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||||||| |||||||||| ||||||||  ||| |      |||||||||||||||||||||||| ||||| ||||||    
T  29646148 aaaaccggttcataaggtgaggattgcctcctctatataaactcctatcaagagtcttatctatccaatgtgggacatgaatttttcccaata 29646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 33834034 - 33833942
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||||||| || ||||||| |||||||| |||| |      |||||||||| |||||||||||| |||||||||||||    
T  33834034 aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttatctatccgatgtgggacatgggttttttccaata 33833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 33855775 - 33855683
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |      |||||||||| ||||||||| || |||||| ||||||    
T  33855775 aaaaccggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttatctatccgatgtgggacttgggtttttcccaata 33855683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 16565182 - 16565090
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||| |      |||||||||| ||||||||| || |||||| ||||||    
T  16565182 aaaatcggttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 16565090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 16600480 - 16600572
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||| |      |||||||||| ||||||||| || |||||| ||||||    
T  16600480 aaaatcggttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 16600572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 36492575 - 36492610
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  36492575 taaggtgaggagtgcctcctctttataaacttttat 36492610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 4258216 - 4258316
Alignment:
Q  175 atccttaaaa--ccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaat 266  Q
    ||||||||||  |||||||||||||||||||||||||||| ||  |||||| |||| |      |||||||||| ||||||||| ||||||||| |||||    
T  4258216 atccttaaaaagccggttcataaggtgaggagtgcctcctattggtaaactcttatcaagagtcttatctatccgatgtgggacttgagtttttcccaat 4258315  T
Q  267 a 267  Q
    |    
T  4258316 a 4258316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 7832983 - 7833025
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  7832983 aaaaccggttcataaggtgaggattgcctcctctatataaact 7833025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 43167913 - 43167955
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  43167913 aaaaccggctcataaggtgaggattgcctcctctttataaact 43167955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 4258020 - 4258067
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||| |||||||||||||||||||||||||| || ||||||| ||||    
T  4258020 aaaactggttcataaggtgaggagtgcctcctattgataaactcttat 4258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 10903514 - 10903596
Alignment:
Q  191 cataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||| |||||| |||||||||| |||||||| |||| |      |||||||||| ||||||||||||||||||| ||||||    
T  10903514 cataagttgaggattgcctcctctatataaactcttatcaagagtcttatctatccgatgtgggacatgagtttttcccaata 10903596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 33834239 - 33834192
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||| || ||||||| |||||||| ||||    
T  33834239 aaaaccggttcataaggtgaggattgtctcctctatataaactcttat 33834192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 37272077 - 37272112
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37272077 taaggtgaggagtgcctcctctttataaactcttat 37272112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 47856011 - 47856058
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| ||||    
T  47856011 aaaatcggctcataaggtggggagtgcctcctctttataaactcttat 47856058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 257299 - 257329
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  257299 taaggtgaggagtgcctcctctttataaact 257329  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 1661223 - 1661253
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  1661223 taaggtgaggagtgcctcctctttataaact 1661253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 7135275 - 7135305
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  7135275 taaggtgaggagtgcctcctctttataaact 7135305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 9379084 - 9379042
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    ||||||||||  ||||||||||| |||||||||||||||||||    
T  9379084 aaaaccggtttgtaaggtgaggattgcctcctctttataaact 9379042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 22206313 - 22206343
Alignment:
Q  196 ggtgaggagtgcctcctctttataaactttt 226  Q
    |||||||||||||||||||||||||||||||    
T  22206313 ggtgaggagtgcctcctctttataaactttt 22206343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 22228426 - 22228396
Alignment:
Q  196 ggtgaggagtgcctcctctttataaactttt 226  Q
    |||||||||||||||||||||||||||||||    
T  22228426 ggtgaggagtgcctcctctttataaactttt 22228396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 28910104 - 28910074
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  28910104 taaggtgaggagtgcctcctctttataaact 28910074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 29645899 - 29645857
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    ||||||||||||||||||||||| |||||||| | ||||||||    
T  29645899 aaaaccggttcataaggtgaggattgcctcctttatataaact 29645857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 41670655 - 41670625
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  41670655 taaggtgaggagtgcctcctctttataaact 41670625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 43288604 - 43288574
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  43288604 taaggtgaggagtgcctcctctttataaact 43288574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 43384312 - 43384342
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  43384312 taaggtgaggagtgcctcctctttataaact 43384342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 44760540 - 44760574
Alignment:
Q  194 aaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||||||||||||||||| ||||    
T  44760540 aaggtgaggagtgcctcctctttataaactcttat 44760574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 42556165 - 42556124
Alignment:
Q  187 ggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||| ||||| ||| |||||||||||||||||    
T  42556165 ggttcataaggtgaagagtgtctcttctttataaacttttat 42556124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 6813317 - 6813345
Alignment:
Q  195 aggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||    
T  6813317 aggtgaggagtgcctcctctttataaact 6813345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 31149130 - 31149094
Alignment:
Q  192 ataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  31149130 ataaggtgaggagtgcctcctctttgtaaactcttat 31149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 31167422 - 31167386
Alignment:
Q  192 ataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  31167422 ataaggtgaggagtgcctcctctttgtaaactcttat 31167386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 40703445 - 40703473
Alignment:
Q  195 aggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||    
T  40703445 aggtgaggagtgcctcctctttataaact 40703473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 56511381 - 56511334
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56511381 aaaaccggttcataaggtgaggagtgcctcctctttataaactcttat 56511334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 53863989 - 53863942
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  53863989 aaaaccggttcataaggtgaggagtgtctcctctttataaactattat 53863942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 56511588 - 56511541
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  56511588 aaaatcggttcataaggtgaggagtgcctcctctttataaactcttat 56511541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 10390495 - 10390587
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat------aattatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||| ||||||||||||||||| || |||||||||||||||| ||||      | |||||||||||||||||||| ||| |||||| |||||    
T  10390495 aaaactggttcataaggtgaggaatgtctcctctttataaactattatcaagagacttatctatccaatgtgggacttgaatttttttcaata 10390587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 14594924 - 14594877
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  14594924 aaaatcggttcataaggtgaagagtgcctcctctttataaactcttat 14594877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 22865853 - 22865806
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||||    
T  22865853 aaaaccggttcataaggtgaggactgccccctctttataaactattat 22865806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 41743620 - 41743573
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||    
T  41743620 aaaaccggttcataaggtgaggattgcctcctctatataaactcttat 41743573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 27048170 - 27048204
Alignment:
Q  194 aaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||||||||||||||||||||||    
T  27048170 aaggtgaggagtgcctcctctttataaacttttat 27048204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 50307360 - 50307318
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  50307360 aaaactggttcataaggtgaggagtgcctccgctttataaact 50307318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 10390695 - 10390743
Alignment:
Q  180 taaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||| |||| ||||||||||||||| |||||||||||||||| ||||    
T  10390695 taaaactggttgataaggtgaggagtgtctcctctttataaactattat 10390743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 14945227 - 14945135
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact-tttataa-----ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||||||| ||| |||||| |||||||| |||  ||     |||||||||| |||||||||||| |||||| ||||||    
T  14945227 aaaaccggttcataaggtgaggattgcatcctctatataaactctttcgaagagtcttatctatccgatgtgggacatgtgtttttcccaata 14945135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 14115765 - 14115812
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||| ||| |||||| |||||||| ||||    
T  14115765 aaaaccggttcataaggtgaggattgcatcctctatataaactcttat 14115812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 27048440 - 27048475
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27048440 taaggtgaggagtgcctcctctttataaactcttat 27048475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 28085766 - 28085731
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28085766 taaggtgaggagtgcctcctctttataaactcttat 28085731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 52214687 - 52214652
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  52214687 taaggtgaggagtgcctcctctttataaactcttat 52214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 52827264 - 52827299
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  52827264 taaggtgaggagtgcctcctctttataaactcttat 52827299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 990619 - 990589
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  990619 taaggtgaggagtgcctcctctttataaact 990589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 991109 - 991079
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  991109 taaggtgaggagtgcctcctctttataaact 991079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 21497715 - 21497745
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  21497715 taaggtgaggagtgcctcctctttataaact 21497745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 21498259 - 21498229
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  21498259 taaggtgaggagtgcctcctctttataaact 21498229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 22867156 - 22867126
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  22867156 taaggtgaggagtgcctcctctttataaact 22867126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 29669395 - 29669425
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  29669395 taaggtgaggagtgcctcctctttataaact 29669425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 29669710 - 29669740
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  29669710 taaggtgaggagtgcctcctctttataaact 29669740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 45426968 - 45426998
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  45426968 taaggtgaggagtgcctcctctttataaact 45426998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 45427284 - 45427314
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  45427284 taaggtgaggagtgcctcctctttataaact 45427314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 48843049 - 48843079
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  48843049 taaggtgaggagtgcctcctctttataaact 48843079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 51469553 - 51469523
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  51469553 taaggtgaggagtgcctcctctttataaact 51469523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 53740254 - 53740224
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  53740254 taaggtgaggagtgcctcctctttataaact 53740224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 32987503 - 32987536
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaactttt 226  Q
    ||||||| ||||||||||||||||||||||||||    
T  32987503 taaggtgcggagtgcctcctctttataaactttt 32987536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 43972427 - 43972394
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaactttt 226  Q
    |||||||||||||||||||||||||| |||||||    
T  43972427 taaggtgaggagtgcctcctctttatcaactttt 43972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 35011948 - 35011901
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35011948 aaaaccggttcataaggtgaggagtgcctcctctttataaactcttat 35011901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 50203877 - 50203919
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  50203877 aaaaccggtttataaggtgaggagtgcctcctctttataaact 50203919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 12799942 - 12799872
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttataattatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||| ||||| ||||||||||||| |||||    ||||||| ||||||||| ||||||||||||||||    
T  12799942 taaggtgaggattgccttctctttataaactcttata----tctatccgatgtgggacttgagttttttccaata 12799872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 35011741 - 35011649
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||||||||||||||||||||||| ||||||||||||| || |||| |      |||||||  ||||||||||| || |||||||||||||    
T  35011741 aaaaccggttcataaggtgaggagtgtctcctctttataatctcttatcaagagtcttatctactcaatgtgggacttgggttttttccaata 35011649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 53761418 - 53761465
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  53761418 aaaaccggctcattaggtgaggagtgcctcctctttataaactcttat 53761465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 26926991 - 26926900
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||||||| || ||||||| |||||||| |||| |      |||||||||  |||||||||||| |||||||||||||    
T  26926991 aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttatctatctgatgtgggacatg-gttttttccaata 26926900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 44461373 - 44461332
Alignment:
Q  180 taaaaccggttcataaggtgaggagtgcctcctctttataaa 221  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  44461373 taaaactggttcataaggtgaggagtgtctcctctttataaa 44461332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 19984433 - 19984513
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataattatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||||| || ||||||| ||| |||||||||| |||||||| ||||      |||||| ||||||||||||||||||| ||||||    
T  19984433 aaaaccggatcgtaaggtgcggattgcctcctctatataaactcttat------ctatccgatgtgggacatgagtttttcccaata 19984513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 29763716 - 29763763
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||| || |||||| |||||||||||||||| ||||    
T  29763716 aaaaccggttcataagatggggagtgtctcctctttataaactcttat 29763763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 35015569 - 35015522
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||| | |||| ||||||| ||||||||||||||||||||||||    
T  35015569 aaaaccggcttataaagtgaggattgcctcctctttataaacttttat 35015522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 39269129 - 39269082
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||| ||||||||||||||||| |||||||||| |||||||| ||||    
T  39269129 aaaactggttcataaggtgaggattgcctcctctatataaactcttat 39269082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 44367862 - 44367815
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||| ||||||||||||||||| |||||||||| |||||||| ||||    
T  44367862 aaaactggttcataaggtgaggattgcctcctctatataaactcttat 44367815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 13769323 - 13769353
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  13769323 taaggtgaggagtgcctcctctttataaact 13769353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 21750547 - 21750517
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  21750547 taaggtgaggagtgcctcctctttataaact 21750517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 24860093 - 24860123
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  24860093 taaggtgaggagtgcctcctctttataaact 24860123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 27219401 - 27219371
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  27219401 taaggtgaggagtgcctcctctttataaact 27219371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 31563731 - 31563761
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  31563731 taaggtgaggagtgcctcctctttataaact 31563761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 31564035 - 31564065
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  31564035 taaggtgaggagtgcctcctctttataaact 31564065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 34715487 - 34715517
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  34715487 taaggtgaggagtgcctcctctttataaact 34715517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 38300784 - 38300814
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  38300784 taaggtgaggagtgcctcctctttataaact 38300814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 43101403 - 43101433
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  43101403 taaggtgaggagtgcctcctctttataaact 43101433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 44573711 - 44573681
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  44573711 taaggtgaggagtgcctcctctttataaact 44573681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 44574008 - 44573978
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  44574008 taaggtgaggagtgcctcctctttataaact 44573978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 10453735 - 10453764
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaac 222  Q
    ||||||||||||||||||||||||||||||    
T  10453735 taaggtgaggagtgcctcctctttataaac 10453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 47833694 - 47833723
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaac 222  Q
    ||||||||||||||||||||||||||||||    
T  47833694 taaggtgaggagtgcctcctctttataaac 47833723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 49477399 - 49477366
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaactttt 226  Q
    ||||||||||| ||||||||||||||||||||||    
T  49477399 taaggtgaggattgcctcctctttataaactttt 49477366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 54369122 - 54369081
Alignment:
Q  182 aaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||  ||| |||||||||||||||||||||||||||    
T  54369122 aaaccggtttgtaaagtgaggagtgcctcctctttataaact 54369081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 10758844 - 10758880
Alignment:
Q  231 ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  10758844 ttatctatccgatgtgggacttgagttttttccaata 10758880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 14170031 - 14170059
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaa 221  Q
    |||||||||||||||||||||||||||||    
T  14170031 taaggtgaggagtgcctcctctttataaa 14170059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 42637823 - 42637859
Alignment:
Q  231 ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  42637823 ttatctatccaatgtgggatatgagtttttcccaata 42637859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 38871175 - 38871222
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38871175 aaaaccggttcttaaggtgaggagtgcctcctctttataaacttttat 38871222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 38870969 - 38871016
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  38870969 aaaaccggttcttaaggtgaggagtgcctccactttataaacttttat 38871016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 6237988 - 6238065
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataattatctatccaatgtgggacatgagtttt 259  Q
    ||||||||||||||||||||||| || ||||||| |||||||| |||| |  | |||||| ||||||||||||||||||    
T  6237988 aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaaga-ctatccgatgtgggacatgagtttt 6238065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 22826765 - 22826853
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttcc 263  Q
    ||||||||||||||||||||||| || ||||||| |||||||| |||| |      |||||||||| |||||||||||| |||||||||    
T  22826765 aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttatctatccgatgtgggacatgggttttttcc 22826853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 6238357 - 6238404
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||    
T  6238357 aaaaccggttcataaggtgaggattgcctcctctatataaactcttat 6238404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 10017348 - 10017395
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  10017348 aaaatcggttcataaggtgaggagtgcttcctctttataaactcttat 10017395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 29413432 - 29413385
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||    
T  29413432 aaaactggctcataaggtgaggagtgcctcctctttataaactcttat 29413385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 47377922 - 47377827
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa---------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||||||| || ||||||| |||||||| |||| |         |||||||||| ||||||||||||||||||| ||||||    
T  47377922 aaaaccggttcataaggtgaggattgtctcctctatataaactattattatcaagagtcttatctatccgatgtgggacatgagtttttcccaata 47377827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 35892094 - 35892058
Alignment:
Q  192 ataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35892094 ataaggtgaggagtgcctcctctttataaactcttat 35892058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 45982415 - 45982371
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttt 225  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||    
T  45982415 aaaaccggttcgtaaagtgaagagtgcctcctctttataaacttt 45982371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 2697363 - 2697393
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  2697363 taaggtgaggagtgcctcctctttataaact 2697393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 4022157 - 4022187
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  4022157 taaggtgaggagtgcctcctctttataaact 4022187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 17419859 - 17419829
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  17419859 taaggtgaggagtgcctcctctttataaact 17419829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 19937075 - 19937105
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  19937075 taaggtgaggagtgcctcctctttataaact 19937105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 20429256 - 20429302
Alignment:
Q  182 aaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| |||||||||||||| |||||| ||||||||||||||| ||||    
T  20429256 aaactggttcataaggtgatgagtgcttcctctttataaactcttat 20429302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 20735827 - 20735797
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  20735827 taaggtgaggagtgcctcctctttataaact 20735797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 31305783 - 31305753
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  31305783 taaggtgaggagtgcctcctctttataaact 31305753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 36326978 - 36326948
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  36326978 taaggtgaggagtgcctcctctttataaact 36326948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 37600956 - 37600914
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  37600956 aaaaccggcttataaggtgaggagtgccgcctctttataaact 37600914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 38474355 - 38474325
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  38474355 taaggtgaggagtgcctcctctttataaact 38474325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 43423351 - 43423321
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  43423351 taaggtgaggagtgcctcctctttataaact 43423321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 45403512 - 45403482
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  45403512 taaggtgaggagtgcctcctctttataaact 45403482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 20735594 - 20735566
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaa 221  Q
    |||||||||||||||||||||||||||||    
T  20735594 taaggtgaggagtgcctcctctttataaa 20735566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 21538954 - 21538994
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaa 221  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  21538954 aaaaccggtttgtaaggtgaggattgcctcctctttataaa 21538994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 22892467 - 22892495
Alignment:
Q  195 aggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||    
T  22892467 aggtgaggagtgcctcctctttataaact 22892495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 25999107 - 25999060
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  25999107 aaaaccggttcataaggtgaggagtgtctcctctttataaactattat 25999060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 26098838 - 26098791
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26098838 aaaaccggttcataaggtgaggagtgtctcctctttataaactattat 26098791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 25998901 - 25998808
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaatag 268  Q
    |||| ||||||||||||||||||||| |||||||||||||||| |||| |      |||||||||| ||||||||| || |||||| |||||||    
T  25998901 aaaagcggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttatctatccgatgtgggacttgggtttttcccaatag 25998808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 26098426 - 26098333
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaatag 268  Q
    |||| ||||||||||||||||||||| |||||||||||||||| |||| |      |||||||||| ||||||||| || |||||| |||||||    
T  26098426 aaaagcggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttatctatccgatgtgggacttgggtttttcccaatag 26098333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 26098632 - 26098585
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  26098632 aaaagcggttcataaggtgaggagtgtctcctctttataaactattat 26098585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 1744874 - 1744904
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  1744874 taaggtgaggagtgcctcctctttataaact 1744904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 8144089 - 8144059
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  8144089 taaggtgaggagtgcctcctctttataaact 8144059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 10418370 - 10418400
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  10418370 taaggtgaggagtgcctcctctttataaact 10418400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 29742468 - 29742500
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttt 225  Q
    ||||||||||| |||||||||||||||||||||    
T  29742468 taaggtgaggattgcctcctctttataaacttt 29742500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 43901037 - 43901129
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||||||||||| || ||||||| |||||||| |||| |      |||||||||| |||||||||||| |||||| ||||||    
T  43901037 aaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 43901129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25186608 - 25186562
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaactttta 227  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  25186608 aaaaccggttcataaggtgaggattgtctcctctatataaactttta 25186562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 39588104 - 39588146
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  39588104 aaaaccggcttataaggtgaggagtgcctcctctttataaact 39588146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 41456342 - 41456416
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat---aattatctatccaatgtgggacat 252  Q
    ||||||||||||| ||||||||| || ||||||| |||||||| ||||    ||||||||||| |||||||||||    
T  41456342 aaaaccggttcatcaggtgaggattgtctcctctatataaactcttatcaggattatctatccgatgtgggacat 41456416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 3895215 - 3895168
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||| |||||||||||||||| |||||||||| |||||||| ||||    
T  3895215 aaaaccagttcataaggtgaggattgcctcctctatataaactcttat 3895168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 15968206 - 15968253
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||  |||||||||| |||||||| ||||    
T  15968206 aaaaccggttcataaggtgagggttgcctcctctatataaactcttat 15968253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 34248149 - 34248114
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34248149 taaggtgaggagtgcctcctctttataaactcttat 34248114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 34248431 - 34248396
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34248431 taaggtgaggagtgcctcctctttataaactcttat 34248396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 36997238 - 36997203
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36997238 taaggtgaggagtgcctcctctttataaactcttat 36997203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 18905928 - 18905898
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  18905928 taaggtgaggagtgcctcctctttataaact 18905898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 20298548 - 20298578
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  20298548 taaggtgaggagtgcctcctctttataaact 20298578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 21085180 - 21085210
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  21085180 taaggtgaggagtgcctcctctttataaact 21085210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 22189018 - 22188927
Alignment:
Q  171 acttatccttaaaac-cggttcataaggtgaggagtgcctcctctttataaacttttataattatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||||||  | ||| || ||||||||| |||||||||  |||||||||||||      |||||| ||||||||||||||||||| ||||||    
T  22189018 acttatccttaaaaatcagtttatcaggtgaggattgcctcctcaatataaacttttat------ctatccgatgtgggacatgagtttttcccaata 22188927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 32931473 - 32931443
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  32931473 taaggtgaggagtgcctcctctttataaact 32931443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 39587878 - 39587920
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||| | |||||||||||||||| |||||||||||||||    
T  39587878 aaaaccggcttataaggtgaggagtgcttcctctttataaact 39587920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 21653876 - 21653843
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaactttt 226  Q
    |||||||||||||||||||||| |||||||||||    
T  21653876 taaggtgaggagtgcctcctctgtataaactttt 21653843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 41456521 - 41456607
Alignment:
Q  175 atccttaaaaccggttcataaggtgaggagtgcctcctctttataaacttttataattatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||||||| | | |||| ||||||||| || ||||||| |||||||| ||||      ||||| |||||||||||||||||||| ||||||    
T  41456521 atccttaaaaaccgatcatcaggtgaggactgtctcctctatataaactcttat------ctatctaatgtgggacatgagtttttcccaata 41456607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 39268102 - 39268010
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||| ||||||||||||||||||||||||| |||||||||| |||| |      |||||||||| ||||||||| || |||||| ||||||    
T  39268102 aaaaccagttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 39268010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 39268310 - 39268218
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||||||||||||||||||||||||||||  |||||||||| |||| |      |||||||||| ||||||||| || |||||| ||||||    
T  39268310 aaaaccggttcataaggtgaggagtgcctccaatttataaactcttatcaagagttttatctatccgatgtgggacttgggtttttcccaata 39268218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 18107917 - 18107877
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaa 221  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  18107917 aaaaccggtttataaggtgaggagtgcctcctctttataaa 18107877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 1028113 - 1028155
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  1028113 aaaaccggtttgtaaggtgaggagtgcctcctctttataaact 1028155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 2716416 - 2716380
Alignment:
Q  192 ataaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2716416 ataaggtgaggagtgtctcctctttataaacttttat 2716380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 18873214 - 18873305
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaat 266  Q
    ||||| ||||||||||||||||| |||||||||| |||||||| |||| |      |||||||||| |||||||||||| | |||| |||||    
T  18873214 aaaactggttcataaggtgaggattgcctcctctatataaactcttatcaatagtcttatctatccgatgtgggacatgggcttttcccaat 18873305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 2716630 - 2716583
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||||| | |||||||||||||||||||||| ||||||||| ||||    
T  2716630 aaaaccggcttataaggtgaggagtgcctcctccttataaactcttat 2716583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 28156102 - 28156028
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttataattatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||| ||||||||||||||||||| | |   || ||||||| ||||||||| || |||||| ||||||    
T  28156102 taaggtgaggattgcctcctctttataaactctgagtcttgtctatccgatgtgggacttgggtttttcccaata 28156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 29396378 - 29396408
Alignment:
Q  196 ggtgaggagtgcctcctctttataaactttt 226  Q
    |||||||||||||||||||||||||||||||    
T  29396378 ggtgaggagtgcctcctctttataaactttt 29396408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 48343 - 48376
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaactttt 226  Q
    ||||||||||| ||||||||||||||||||||||    
T  48343 taaggtgaggattgcctcctctttataaactttt 48376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 39386754 - 39386662
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    |||||| |||||||||||||||| |||||||||| |||||||| |||| |      |||||||||| |||||||||||| |||||| ||||||    
T  39386754 aaaaccagttcataaggtgaggattgcctcctctatataaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 39386662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 27545136 - 27545228
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttataa------ttatctatccaatgtgggacatgagttttttccaata 267  Q
    ||||||||||  ||||||||||| ||||||||||||||||||| || | |      |||||||||| ||||||||||||  ||||||||||||    
T  27545136 aaaaccggtttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttatctatccgatgtgggacatggattttttccaata 27545228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 8044565 - 8044613
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctc-tttataaacttttat 228  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  8044565 aaaactggttcataaggtgaggagtgcctcctcttttataaactcttat 8044613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 15061297 - 15061329
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttt 225  Q
    |||||||||||||||||||||||||||||||||    
T  15061297 taaggtgaggagtgcctcctctttataaacttt 15061329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 22447390 - 22447342
Alignment:
Q  180 taaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||| ||||    
T  22447390 taaaactggttcataaggtgaggagtgcgtcctctttaaaaactcttat 22447342  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 10849523 - 10849558
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaacttttat 228  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10849523 taaggtgaggagtgcctcctctttataaactcttat 10849558  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 30156304 - 30156250
Alignment:
Q  171 acttatcctta--aaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||  ||||||| |  |||||||||||||||||||||||||||||||    
T  30156304 acttatccttacaaaaccggcttgtaaggtgaggagtgcctcctctttataaact 30156250  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 3976503 - 3976533
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  3976503 taaggtgaggagtgcctcctctttataaact 3976533  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 10536949 - 10536991
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaact 223  Q
    ||||||||||||||||||||| ||||||||||  |||||||||    
T  10536949 aaaaccggttcataaggtgagaagtgcctccttcttataaact 10536991  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 11969124 - 11969094
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  11969124 taaggtgaggagtgcctcctctttataaact 11969094  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 17264995 - 17265041
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaactttta 227  Q
    ||||| ||||||| ||||||||| |||||||||| ||||||||||||    
T  17264995 aaaactggttcatcaggtgaggattgcctcctctatataaactttta 17265041  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 17509181 - 17509151
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  17509181 taaggtgaggagtgcctcctctttataaact 17509151  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 21213917 - 21213947
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  21213917 taaggtgaggagtgcctcctctttataaact 21213947  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 21214233 - 21214263
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  21214233 taaggtgaggagtgcctcctctttataaact 21214263  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 23054398 - 23054368
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  23054398 taaggtgaggagtgcctcctctttataaact 23054368  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 42768366 - 42768396
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  42768366 taaggtgaggagtgcctcctctttataaact 42768396  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 43195856 - 43195826
Alignment:
Q  193 taaggtgaggagtgcctcctctttataaact 223  Q
    |||||||||||||||||||||||||||||||    
T  43195856 taaggtgaggagtgcctcctctttataaact 43195826  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 43169313 - 43169284
Alignment:
Q  194 aaggtgaggagtgcctcctctttataaact 223  Q
    ||||||||||||||||||||||||||||||    
T  43169313 aaggtgaggagtgcctcctctttataaact 43169284  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 29676245 - 29676143
Alignment:
Q  171 acttatccttaaaac-cggttcataaggtgaggagtgcctcctctttataaacttttat--aa--ttatctatccaatgtgggacatgagttttttccaa 265  Q
    ||||||||||||||  | ||| |||||||||||| || ||||||| |||||||||||||  ||  |||||||| | |||||||| ||| |||||| ||||    
T  29676245 acttatccttaaaaatccgtttataaggtgaggattgtctcctctatataaacttttatcgaatcttatctattcgatgtgggatatgggtttttcccaa 29676146  T
Q  266 tag 268  Q
    |||    
T  29676145 tag 29676143  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 222454 - 222501
Alignment:
Q  181 aaaaccggttcataaggtgaggagtgcctcctctttataaacttttat 228  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  222454 aaaatcggttcataaggtgaagagtgcctcctctttataaactcttat 222501  T

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