View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_high_19 (Length: 472)
Name: NF11142_high_19
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 21466840 - 21466398
Alignment:
| Q |
18 |
cagaaatattattgttactcaacataagctcttcaagattcgataattttcctaaacttttcggtattccaccagagaaataattcaaagaaaaatcaag |
117 |
Q |
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| T |
21466840 |
cagaaatattattgttactcaacataagctcttcaagattcgataattttcctaaacttttcggtattccaccagagaaataattcaaagaaaaatcaag |
21466741 |
T |
|
| Q |
118 |
aatcttcaaactactacagtttccaatttcctcaggtatgctaccaacaaaactattttgccatagcaaaatcttttcaagcttcataagcttacctatc |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21466740 |
aatctccaaactactacagtttccaatttcctcaggtatgctaccaacaaaactattttgccatagcaaaatcttttcaagcttcacaagcttacctatc |
21466641 |
T |
|
| Q |
218 |
tcaaaaggaatctcaccagaaagatcattctcatacaaaaacaagttcactagctcagaacagttaccaatttcatgaggaatttcaccagaaattgaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21466640 |
tcaaaaggaatctcaccagaaagatcattctcatacaaaaacaagttcacaagctcagaacagttaccaatttcatgaggaatttcaccagaaattgaag |
21466541 |
T |
|
| Q |
318 |
tactataaatagatattgtttgaagcatggttaacttacctaatgaattaggtaatgaacctgaaattttagtgtcagcaagtcctaaaacagtcaaatt |
417 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21466540 |
tactataaatagatattgtttgaagcatagttaatttacctaatgaattaggtaatgaacctgaaattttagtgtcagcaagtcctaaaacagtcaaatt |
21466441 |
T |
|
| Q |
418 |
cttgcattcacctaactcttctggaatcttccctacaatatct |
460 |
Q |
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| T |
21466440 |
cttgcattcacctaactcttctggaatctttcctacaatatct |
21466398 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 460
Target Start/End: Complemental strand, 20130506 - 20130423
Alignment:
| Q |
377 |
cctgaaattttagtgtcagcaagtcctaaaacagtcaaattcttgcattcacctaactcttctggaatcttccctacaatatct |
460 |
Q |
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||||||||| |||| |||||||| ||||||||||||||||| | |||||||| | |||||| ||||||||||| || |||||| |
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| T |
20130506 |
cctgaaattctagtatcagcaagccctaaaacagtcaaattactacattcaccaatctcttcaggaatcttcccaactatatct |
20130423 |
T |
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