View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_high_2 (Length: 648)
Name: NF11142_high_2
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 168 - 630
Target Start/End: Original strand, 26578826 - 26579288
Alignment:
| Q |
168 |
tgtctatcattccaagtgtgttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
267 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26578826 |
tgtctatcattccaagtgtcttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
26578925 |
T |
|
| Q |
268 |
caacgaaacatcatcgttcgctaatgcgcgcattgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaa |
367 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26578926 |
caacgaaacatcatcgttcgctaatgcgcgcactgactggaaggaaacaccggaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaa |
26579025 |
T |
|
| Q |
368 |
gtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaa |
467 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26579026 |
gtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagaggaaaattgagaaggaagacaagaatgatacctggcatcgcgttgaacgaa |
26579125 |
T |
|
| Q |
468 |
gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579126 |
gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc |
26579225 |
T |
|
| Q |
568 |
taaggtggaggttaagaagcctgatgtgaaacctgttcagattacaggctaagtcttcaaaat |
630 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26579226 |
taaggtggaggttaagaagcctgatgtgaagcctgttcagattacaggctaagtcttcaaaat |
26579288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 26578672 - 26578746
Alignment:
| Q |
16 |
acatcatctatagtgaccaaatcactcccatcgccttctatataaagctctcacacacaccc--catttcctcat |
88 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
26578672 |
acatcatctatagtgaccaaatcactcccatcgccctctatataaagctctcacacacacacaccatttcctcat |
26578746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 572
Target Start/End: Original strand, 34918961 - 34919231
Alignment:
| Q |
302 |
gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga |
401 |
Q |
| |
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|||||||| ||||||| ||||| ||||| |||| | |||||||| || ||||||| || |||||||| ||||| || ||||||| |||| ||| |
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| T |
34918961 |
gactggaaagaaacacaagaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgc |
34919060 |
T |
|
| Q |
402 |
agataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagc-cagggaagttttctccggcggtttaggttgc |
500 |
Q |
| |
|
|||||||||| ||||| || | ||| ||||||| ||| | |||| |||||||| ||||| |||| | ||||||||| | || |||||||||||| |
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| T |
34919061 |
agataagtggtgagagaaacaaagagcaggaagagaaggatgataagtggcatcgtgttgagagaagttctgggaagttta-tgaggaggtttaggttgc |
34919159 |
T |
|
| Q |
501 |
cggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaagg |
572 |
Q |
| |
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| ||||||| ||| ||||| |||| |||||||| ||||||||||| || |||||||||| ||||||||||| |
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| T |
34919160 |
ctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaagg |
34919231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 299 - 594
Target Start/End: Complemental strand, 36296773 - 36296478
Alignment:
| Q |
299 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
398 |
Q |
| |
|
||||| |||||||| || || ||||||||||| || ||||| |||||||| || |||||||||| |||||||||||||| ||||||||||| ||| |
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| T |
36296773 |
attgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttc |
36296674 |
T |
|
| Q |
399 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
498 |
Q |
| |
|
| |||| |||||||||||||| ||||||| |||||||||||| | ||||||||||| || || ||| |||| ||| | || |||| || || |
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| T |
36296673 |
ttcagattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagatt |
36296574 |
T |
|
| Q |
499 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
594 |
Q |
| |
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||| || ||||| ||| ||||| |||||||||||| |||||||||||||| || ||||| | |||||| || | || |||||||| |||||||| |
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| T |
36296573 |
gcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaaacctgatgt |
36296478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 299 - 594
Target Start/End: Complemental strand, 35073000 - 35072705
Alignment:
| Q |
299 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
398 |
Q |
| |
|
||||| |||||||| || || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
35073000 |
attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttc |
35072901 |
T |
|
| Q |
399 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
498 |
Q |
| |
|
| ||||||| || |||||||| ||||| || ||||| ||||| ||| |||||||| || || || ||| |||| || | || ||||||| | |
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|
| T |
35072900 |
ttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagata |
35072801 |
T |
|
| Q |
499 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
594 |
Q |
| |
|
|| |||||||| || ||||| | |||||||||| |||||||||||||| || ||||||| |||||| || | || |||||||| |||||||| |
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| T |
35072800 |
accagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt |
35072705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 305 - 445
Target Start/End: Original strand, 35097688 - 35097828
Alignment:
| Q |
305 |
tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttgaaga |
404 |
Q |
| |
|
|||||||| || || |||||||| || ||| | || |||||||| || |||||||||| |||||||||||||| ||||||| |||| ||| | ||| |
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| T |
35097688 |
tggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcaga |
35097787 |
T |
|
| Q |
405 |
taagtggagagaggaaaattgagaaggaagacaagaacgat |
445 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||| ||||||||| |
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|
| T |
35097788 |
taagcggagagaggaatgttgagaaagaagataagaacgat |
35097828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 35106860 - 35106952
Alignment:
| Q |
299 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
391 |
Q |
| |
|
||||| |||||||| || || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35106860 |
attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgat |
35106952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 36936064 - 36936005
Alignment:
| Q |
332 |
ttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
391 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36936064 |
ttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgat |
36936005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 36940772 - 36940703
Alignment:
| Q |
322 |
agcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
391 |
Q |
| |
|
||||||||| ||||| || ||| |||| || ||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
36940772 |
agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgat |
36940703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 35098037 - 35098117
Alignment:
| Q |
365 |
gaagtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgat |
445 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| | ||||||| ||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
35098037 |
gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgat |
35098117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 299 - 594
Target Start/End: Complemental strand, 24014499 - 24014204
Alignment:
| Q |
299 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
398 |
Q |
| |
|
||||| |||||||| || || |||||||| || ||||| || |||||||| || ||||||||||||||||||||||||| ||||||| |||| ||| |
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|
| T |
24014499 |
attgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttc |
24014400 |
T |
|
| Q |
399 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
498 |
Q |
| |
|
| ||||||| ||||||||||| ||||||| ||||| ||||||||| |||||||| || || || ||| |||| || | || | || ||||| |
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|
| T |
24014399 |
ttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggtt |
24014300 |
T |
|
| Q |
499 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
594 |
Q |
| |
|
||| || ||||| || ||||| | |||||||||| |||||||||||||| || ||||||| |||||| || | || |||||||| |||||||| |
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|
| T |
24014299 |
gcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt |
24014204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 24041050 - 24040964
Alignment:
| Q |
305 |
tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
391 |
Q |
| |
|
|||||||| || || |||||||| || ||||| || |||||||| || |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
24041050 |
tggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgat |
24040964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 445
Target Start/End: Original strand, 3123076 - 3123219
Alignment:
| Q |
302 |
gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga |
401 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||||| |||||||| || |||||||||| || ||||||||||| |||||||||||| | ||| | |
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|
| T |
3123076 |
gactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttc |
3123175 |
T |
|
| Q |
402 |
agataagtggagagaggaaaattgagaaggaagacaagaacgat |
445 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
3123176 |
agataagcggagaaaggaccgttgagaaagaagacaagaacgat |
3123219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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