View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_23 (Length: 423)

Name: NF11142_high_23
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_23
NF11142_high_23
[»] chr7 (3 HSPs)
chr7 (1-404)||(28216768-28217180)
chr7 (1-404)||(28237640-28238036)
chr7 (2-404)||(28232811-28233223)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 28217180 - 28216768
Alignment:
Q  1 tcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||    
T  28217180 tcaccgtcactttcagacacagaacctattgctgcaccaccttt-gaacaatgattccgctgcatgcgattctaaggtggttcttcctttacctaggaaa 28217082  T
Q  101 aagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||| |||||||||||||||||||    
T  28217081 aagattaagaaggagaagacgtgtgtcccaatggaagagactgaaaaagcatcgctgtgggacaggtgttttgatggaatgggttttgtggacagcaatc 28216982  T
Q  201 taagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttgggaa 289  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||           |||| |||||||||| ||||    
T  28216981 taagcttcacaaaa-atgtgcaggaggtgaaggagtctgggttggaaaaggctagtgagatgcttgtggcatacaaccttcgctgtgctttacttcggaa 28216883  T
Q  290 ggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatatt 389  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28216882 ggtgattacggaccaatttcaatctgtattgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatatt 28216783  T
Q  390 cttggagatatgaag 404  Q
    |||||||||||||||    
T  28216782 cttggagatatgaag 28216768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 28238036 - 28237640
Alignment:
Q  1 tcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaa 100  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||  |||||||||| | ||||||||    
T  28238036 tcaccgtcactttcagacgcagaacctattgctgcacaaccttt-gaacaatgaggccgctgcatgcgattctaaggctgttcttccttcacctaggaaa 28237938  T
Q  101 aagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatc 200  Q
    | ||||||||||||||| || ||||||||||||                |||||||| ||||  |||| || |||||||| | |||||||||||| ||||    
T  28237937 aggattaagaaggagaa-acttgtgtcccaatg----------------catcgctgtgggatgggaggtttgatggaatggattttgtggacagaaatc 28237855  T
Q  201 taagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtggcg-----------ctctgctttacttgggaa 289  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||           ||||||||||||||||||    
T  28237854 tatgcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaagctagtgagatgcttgtggcgtacaaccttcgctctgctttacttgggaa 28237755  T
Q  290 ggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatatt 389  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28237754 ggtgattatggaccaatttcaatctgtactaggacatgaaagcaactgccaagacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatatt 28237655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 404
Target Start/End: Complemental strand, 28233223 - 28232811
Alignment:
Q  2 caccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaaa 101  Q
    |||||||||||||||||| ||||||||||||||||| || ||| ||||||   ||| ||||||||   |||||||||||||||| ||| | |||||||||    
T  28233223 caccgtcactttcagacaaagaacctattgctgcaccacgttt-gaacaacatggcagctgcatgtggttctaaggtggttctttcttcacctaggaaaa 28233125  T
Q  102 agattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatct 201  Q
     |||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  28233124 ggattaagaaggagaagacttgtgtcccaatggaagggactgatatagcatcgctgtgggacaggaggttcgatggaatgggttttgtggacagcaatct 28233025  T
Q  202 aagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttgggaag 290  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||| || |||||||           |||||||||||||||||||||    
T  28233024 aagcttcacaaaagacgtgcaggaggtgaaggagtctgggttggaaaaagctggtgagattcttgtggcgtacagccttcgctctgctttacttgggaag 28232925  T
Q  291 gtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatattc 390  Q
    ||||||| ||||||||| ||| || || |||||||| | |||||| ||| ||||||||||| ||||||||||| |||||| |||||||||||||||| ||    
T  28232924 gtgattacggaccaattccaagctttagtgggacatcatagcaactgccaagacgaactgattgcaaccaaaggaaaattgaaaatagccaatgatactc 28232825  T
Q  391 ttggagatatgaag 404  Q
    |||| |||||||||    
T  28232824 ttggggatatgaag 28232811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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