View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_27 (Length: 402)

Name: NF11142_high_27

Description: NF11142

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11142_high_27

[»] chr6 (6 HSPs)

Alignment Details

Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 281; E-Value: 1e-157

Query Start/End: Original strand, 14 - 402

Target Start/End: Complemental strand, 32371434 - 32371039

Alignment:

Q	14	agatatcacattcaaatctaagaaacagtctccccactttcagataagtgattgatnnnnnnnn--gtacattgatttacaattaacaaacaccatttac	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32371434	agatatcacattcaaatctaagaaacagtctccccactttcggataagtgattgataaaaaaaaaagtacattgatttacaaattacaaacaccatttac	32371335	T

Q	112	gaactcaaacgactgctcaaatcaaactcaagcgatatgaaatgaagcctacaat-----caacccttcatcgggaactgaatgtatctgatacaaaaca	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32371334	gaactcaaacgactgctcaaatcgaactcaaacgatatgaaatgaagcctacaatacaatcaactcttcatcaggaactgaatgtatctgatacaaaaca	32371235	T

Q	207	cataaaaaacacgtatttgttagacacaagtgtagaatgaacatcctgaaaaattaactaaatccaagataagttccgagaagtataacttcttctttca	306	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|
T	32371234	cacaaaaaacacgtctttgttagacacaagtgtagaatgaacatcctgggaaattaactaaatccaagataagttccgagaagtataatttcttcattca	32371135	T

Q	307	gaaacactcacacatgtggttatactctttttctagtcaacactcaacatacagaaacatgttcttgattttatattccaaataaaattgtagtac	402	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|
T	32371134	gaaacactcacacatgtggttatactctttttctagtcaacactcaacatacagaaacatgttcttgattttatattccaaataacattatagtac	32371039	T

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Target: chr6; HSP #2

Raw Score: 73; E-Value: 3e-33

Query Start/End: Original strand, 244 - 348

Target Start/End: Complemental strand, 32356195 - 32356091

Alignment:

Q	244	tgaacatcctgaaaaattaactaaatccaagataagttccgagaagtataacttcttctttcagaaacactcacacatgtggttatactctttttctagt	343	Q
		\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32356195	tgaacaccttgagaaattaactcaatccaatataagttccgagaagtataacttcttcattcagaaatactcacacatgtggtaatactctttttctagt	32356096	T

Q	344	caaca	348	Q
		\|\|\|\|\|
T	32356095	caaca	32356091	T

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Target: chr6; HSP #3

Raw Score: 52; E-Value: 1e-20

Query Start/End: Original strand, 130 - 232

Target Start/End: Original strand, 32366146 - 32366253

Alignment:

Q	130	aaatcaaactcaagcgatatgaaatgaagcctacaat-----caacccttcatcgggaactgaatgtatctgatacaaaacacataaaaaacacgtattt	224	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	32366146	aaatcgaactcaaacaatatgaaatgaagcctacaatacaatcaactcttcaccgggaactgattgtatccgatacaaaacacacaaaaaacacgtcttt	32366245	T

Q	225	gttagaca	232	Q
		\|\|\|\|\|\|\|\|
T	32366246	gttagaca	32366253	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4

Raw Score: 45; E-Value: 2e-16

Query Start/End: Original strand, 24 - 68

Target Start/End: Original strand, 32365869 - 32365913

Alignment:

Q	24	ttcaaatctaagaaacagtctccccactttcagataagtgattga	68	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32365869	ttcaaatctaagaaacagtctccccactttcagataagtgattga	32365913	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 350 - 398

Target Start/End: Complemental strand, 32370743 - 32370695

Alignment:

Q	350	tcaacatacagaaacatgttcttgattttatattccaaataaaattgta	398	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	32370743	tcaacatacaaaaacatgttcttgattttatattccaaataacattgta	32370695	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 23 - 52

Target Start/End: Complemental strand, 32357003 - 32356974

Alignment:

Q	23	attcaaatctaagaaacagtctccccactt	52	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32357003	attcaaatctaagaaacagtctccccactt	32356974	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]