View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11142_high_34 (Length: 355)
Name: NF11142_high_34
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 10679762 - 10679435
Alignment:
| Q |
12 |
agaagtatattgaaattctcaaaactttatgcaagtgacacaataatttaacaaaatagaataaagtttattataaagtgcaagaaacttcacaagaacc |
111 |
Q |
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| T |
10679762 |
agaagtatattgaaattctcaaaactttatgcaagtgacacaataatttaacaaaatagaataaagtttattataaagtgcaagaaacttcacaagaacc |
10679663 |
T |
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| Q |
112 |
aaagaaaaatagttagaaaaattaagagagatgcatcgatttagcaattcagtgatagggttcttgaactttttcacactcttagcatcaataccaataa |
211 |
Q |
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| T |
10679662 |
aaagaaaaatagttagaaaaattaagagagatgcatcgatttagcaattcagtgatagggttcttgaactttttcacactcttagcatcaataccaataa |
10679563 |
T |
|
| Q |
212 |
taggagcaggactatggatttcaaggagcacaacagcatgtgaaaatttcttccaagaaccacttttaatcataggatttattgttcttgtgatttcact |
311 |
Q |
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| T |
10679562 |
taggagcaggactatggatttcaaggagcacaacagcatgtgaaaatttcttccaagaaccacttttaatcataggatttattgttcttgtgatttcact |
10679463 |
T |
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| Q |
312 |
agttggtttcataggagcatgttttcat |
339 |
Q |
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| T |
10679462 |
agttggtttcataggagcatgttttcat |
10679435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 161 - 339
Target Start/End: Complemental strand, 42969964 - 42969786
Alignment:
| Q |
161 |
cagtgatagggttcttgaactttttcacactcttagcatcaataccaataataggagcaggactatggatttcaaggagcacaacagcatgtgaaaattt |
260 |
Q |
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| T |
42969964 |
cagtgatagggctcttaaacttgttaacacttttagcatccataccaataattggagcaggactatggatggcaaggagcagtacaacttgtgcaaattt |
42969865 |
T |
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| Q |
261 |
cttccaagaaccacttttaatcataggatttattgttcttgtgatttcactagttggtttcataggagcatgttttcat |
339 |
Q |
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| T |
42969864 |
tctccaaacaccacttcttgtaataggttttattgtacttgtgatatcattagctggtttcattggtgcttgttttcat |
42969786 |
T |
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