View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_39 (Length: 325)

Name: NF11142_high_39
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_39
NF11142_high_39
[»] chr4 (8 HSPs)
chr4 (164-314)||(23974078-23974232)
chr4 (147-234)||(15239974-15240062)
chr4 (173-236)||(46224395-46224458)
chr4 (153-282)||(11153758-11153891)
chr4 (230-312)||(15706707-15706790)
chr4 (147-256)||(13884302-13884413)
chr4 (230-314)||(25126219-25126304)
chr4 (252-319)||(19611900-19611967)
[»] chr3 (8 HSPs)
chr3 (147-309)||(15777330-15777491)
chr3 (215-309)||(3290643-3290737)
chr3 (231-314)||(3593099-3593182)
chr3 (160-238)||(49969012-49969091)
chr3 (160-296)||(9733626-9733763)
chr3 (73-130)||(16216373-16216430)
chr3 (73-122)||(20905986-20906035)
chr3 (91-123)||(13921167-13921199)
[»] chr6 (5 HSPs)
chr6 (153-296)||(19769031-19769179)
chr6 (160-234)||(3851171-3851245)
chr6 (176-238)||(19400930-19400993)
chr6 (252-300)||(12987076-12987124)
chr6 (82-130)||(26278853-26278901)
[»] scaffold0281 (1 HSPs)
scaffold0281 (230-314)||(1870-1954)
[»] chr7 (5 HSPs)
chr7 (147-296)||(11508712-11508863)
chr7 (153-296)||(18147605-18147753)
chr7 (160-226)||(3387273-3387340)
chr7 (214-314)||(32945355-32945455)
chr7 (218-300)||(33721244-33721329)
[»] chr8 (4 HSPs)
chr8 (217-314)||(40391386-40391484)
chr8 (252-314)||(17290672-17290734)
chr8 (172-263)||(9883599-9883692)
chr8 (174-214)||(9883280-9883320)
[»] scaffold0009 (1 HSPs)
scaffold0009 (162-238)||(160380-160457)
[»] chr2 (6 HSPs)
chr2 (222-314)||(32623585-32623677)
chr2 (104-238)||(34491398-34491530)
chr2 (234-309)||(16093554-16093629)
chr2 (217-314)||(27386921-27387020)
chr2 (91-130)||(6880726-6880765)
chr2 (91-130)||(6875210-6875249)
[»] chr5 (5 HSPs)
chr5 (153-281)||(39176386-39176519)
chr5 (91-130)||(28710634-28710673)
chr5 (172-233)||(24068061-24068123)
chr5 (92-130)||(24186501-24186539)
chr5 (227-282)||(39435973-39436029)
[»] chr1 (4 HSPs)
chr1 (173-249)||(91082-91160)
chr1 (153-282)||(12786177-12786315)
chr1 (229-307)||(18513810-18513889)
chr1 (162-210)||(41136799-41136847)
[»] scaffold0461 (1 HSPs)
scaffold0461 (160-233)||(12303-12377)
[»] scaffold0019 (1 HSPs)
scaffold0019 (230-314)||(182968-183053)
[»] scaffold0120 (1 HSPs)
scaffold0120 (172-233)||(29143-29205)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 23974078 - 23974232
Alignment:
Q  164 aaaataataaaaattaacaacccttcactagccacatgagtacacaatcct-atgatgaataaaa-ctccccc--ttacctctagtttgcataattgatg 259  Q
    |||||||  ||||||||||||||||||||| |||||||| ||||||  ||| ||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  23974078 aaaataaagaaaattaacaacccttcactatccacatgaatacacagcccttatgatgaataaaaactccccccattacctctagtttgcagaattgatg 23974177  T
Q  260 atttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    ||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  23974178 atttcctacggtgaaatctttctctaggttcttctcgctattcctctttgtctct 23974232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 15240062 - 15239974
Alignment:
Q  147 tcatcaaaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactccccc 234  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||  |||||||| |||||| || |||||||||||||||||||||    
T  15240062 tcatcaaaagaattaagaaaacaacagaaattaacaacccttcactacacacatgagcacacaacccttatgatgaataaaactccccc 15239974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 46224458 - 46224395
Alignment:
Q  173 aaaattaacaacccttcactagccacatgagtacacaatcctatgatgaataaaactccccctt 236  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||    
T  46224458 aaaattaacaacccttcactacccacatgagtaaacaaacctataatgaataaaactccccctt 46224395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 11153758 - 11153891
Alignment:
Q  153 aaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaata-aaactccccc-ttacctctagtttgc 249  Q
    |||| |||||||||| |||||||||||||||   ||||||| |||||||||||||||| || ||||||||||| | |||||||| |||||||||||| |     
T  11153758 aaaggattaagaaaacaataaaaattaacaatttttcactacccacatgagtacacaacccttatgatgaatagagactcccccattacctctagttcga 11153857  T
Q  250 ataa-ttgatgatttgttacggtgaaatctctct 282  Q
    | || ||||||| ||  |||||||||||||||||    
T  11153858 agaatttgatgaattcatacggtgaaatctctct 11153891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 15706707 - 15706790
Alignment:
Q  230 cccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtct 312  Q
    |||| ||||||||||||| ||  |||||||||||| ||||| ||||||||| || | | |||||||||||||||||||||||||    
T  15706707 ccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccctttagattcttctcgctattcctctttgtct 15706790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 13884413 - 13884302
Alignment:
Q  147 tcatcaaaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaat--aaaactcccccttacctcta 243  Q
    |||||||| |||| ||||||||||| ||||||||| || |||||||| |||||| | |||||||||| ||||||||||  | || ||||||||| |||||    
T  13884413 tcatcaaaggaat-aagaaaataatgaaaattaacgactcttcactatccacataaatacacaatccttatgatgaatagagaattcccccttatctcta 13884315  T
Q  244 gtttgcataattg 256  Q
    ||| ||| |||||    
T  13884314 gttcgcaaaattg 13884302  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 25126304 - 25126219
Alignment:
Q  230 cccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    ||||| |||||||||||| ||  ||||||||||||  |||| | |||| ||||||| |||||||||||||||||||||||| ||||    
T  25126304 cccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctcgctattcctctttgcctct 25126219  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 19611967 - 19611900
Alignment:
Q  252 aattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctctgctcc 319  Q
    |||||||||||   |||| |||||||||||||| ||||||||||||||| |||| ||| |||| ||||    
T  19611967 aattgatgattccctacgatgaaatctctctctaggttcttctcgctatccctccttgcctcttctcc 19611900  T

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Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 15777491 - 15777330
Alignment:
Q  147 tcatcaaaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcct-atgatgaataaaactcccccttacctctagt 245  Q
    |||||||| |||| ||||||| | | ||||||||||||| ||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  15777491 tcatcaaaggaat-aagaaaacattgaaaattaacaacc-ttcactacccacataagtacacaacccttatgatgaataaaactcccccttacctctagt 15777394  T
Q  246 ttgcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttg 309  Q
    ||||| || |||| | ||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  15777393 ttgcaaaagtgataaattcctacggtgaaatctctctctaggttcttctcgctattcctctttg 15777330  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 3290643 - 3290737
Alignment:
Q  215 atgatgaataaaactcccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttg 309  Q
    ||||||||||| |||||||||||| |||||||| ||  ||||||||||||  |||||| ||||| |||||| ||||||||||||||||||||||||    
T  3290643 atgatgaataagactcccccttac-tctagttttgcgaaattgatgatttcctacggttaaatccctctctaggttcttctcgctattcctctttg 3290737  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 3593099 - 3593182
Alignment:
Q  231 ccccttacctctagtttgcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    |||||||||||||||||||  ||||||||||||  ||||| ||||||||||  | |||| ||||||||||||||| ||| ||||    
T  3593099 ccccttacctctagtttgccgaattgatgatttcctacggagaaatctctccataggttattctcgctattcctccttgcctct 3593182  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 49969091 - 49969012
Alignment:
Q  160 taagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcccccttac 238  Q
    ||||||||  || ||||||||||||| ||||||| ||||| |||||||||| || ||||||||||||||| |||||||||    
T  49969091 taagaaaacgatgaaaattaacaacctttcactacccacacgagtacacaacccttatgatgaataaaacccccccttac 49969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 9733763 - 9733626
Alignment:
Q  160 taagaaaataa-taaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcc-cccttacctctagtttgcataa-tt 255  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||||||||| || ||  |||||||||||||| ||||||   |||||| | | || ||    
T  9733763 taagaaaataaatgaaaattaacaacccttcactatccacatgagtacacaacccttacaatgaataaaactccaccctta---ctagttcgaagaattt 9733667  T
Q  256 gatgatttgttacggtgaaatctctctctgggttcttctcg 296  Q
    ||||| ||  ||| ||||||||||||||| | |||||||||    
T  9733666 gatgaattcctactgtgaaatctctctctagattcttctcg 9733626  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 16216373 - 16216430
Alignment:
Q  73 tttaacttgaaaatatcgcaattcagaaacgaaaatcaaacatataattacagcaaca 130  Q
    |||||| |||||| ||| |||||| |||||||||||||||||||||||||||| ||||    
T  16216373 tttaacatgaaaacatcacaattctgaaacgaaaatcaaacatataattacagtaaca 16216430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 20905986 - 20906035
Alignment:
Q  73 tttaacttgaaaatatcgcaattcagaaacgaaaatcaaacatataatta 122  Q
    |||||| |||||| ||| ||||||| ||||| ||||||||||||||||||    
T  20905986 tttaacctgaaaacatcacaattcaaaaacggaaatcaaacatataatta 20906035  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 13921167 - 13921199
Alignment:
Q  91 caattcagaaacgaaaatcaaacatataattac 123  Q
    |||||||||||| ||||||||||||||||||||    
T  13921167 caattcagaaacaaaaatcaaacatataattac 13921199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 19769179 - 19769031
Alignment:
Q  153 aaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaata-aaactccccc--ttacctctagtttg 248  Q
    |||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||| || ||||||||||| | ||||||||  |||||||||||| |    
T  19769179 aaaggattaagaaaataataaaaattaacaatctttcactacccacatgagtacacaacccttatgatgaatagagactccccccattacctctagttcg 19769080  T
Q  249 cataa-ttgatgatttgttacggtgaaatctctctctgggttcttctcg 296  Q
     | || ||||||| ||  ||||||||||||||||||| | |||||||||    
T  19769079 aagaatttgatgaattcctacggtgaaatctctctctagattcttctcg 19769031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 3851245 - 3851171
Alignment:
Q  160 taagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcctatgatgaataaaactccccc 234  Q
    |||| ||||||| ||| ||||||||| ||||||| |||||||||||||||| | |||||||||||||||| ||||    
T  3851245 taaggaaataatgaaatttaacaacctttcactacccacatgagtacacaaccttatgatgaataaaacttcccc 3851171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 19400930 - 19400993
Alignment:
Q  176 attaacaacccttcactagccacatgagtacacaatcct-atgatgaataaaactcccccttac 238  Q
    |||||||||| ||||||| ||||| |||||||||| ||| |||||||||||||| |||||||||    
T  19400930 attaacaacctttcactacccacacgagtacacaacccttatgatgaataaaacacccccttac 19400993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 12987124 - 12987076
Alignment:
Q  252 aattgatgatttgttacggtgaaatctctctctgggttcttctcgctat 300  Q
    |||||||||||   ||||||||||||||||||| |||||||||||||||    
T  12987124 aattgatgattccatacggtgaaatctctctctaggttcttctcgctat 12987076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 26278853 - 26278901
Alignment:
Q  82 aaaatatcgcaattcagaaacgaaaatcaaacatataattacagcaaca 130  Q
    |||| ||| ||||||| |||| |||||||||||||||||||||||||||    
T  26278853 aaaacatcacaattcaaaaacaaaaatcaaacatataattacagcaaca 26278901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 1870 - 1954
Alignment:
Q  230 cccccttacctctagtttgcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    ||||| ||||||||||||||| ||||||||||||  ||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  1870 cccccatacctctagtttgcagaattgatgatttcctacggtgaaatctctctgtaggttcttctcgctattcttctttgtctct 1954  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 296
Target Start/End: Complemental strand, 11508863 - 11508712
Alignment:
Q  147 tcatcaaaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaact-cccccttacctctag 244  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||| || ||  |||||||||||| |||||||||||||||    
T  11508863 tcatcaaaggaat-aagaaaataatgaaaattaacaacccttcactatccacatgattacacaacccttacaatgaataaaactccccccttacctctag 11508765  T
Q  245 tttgcataa-ttgatgatttgttacggtgaaatctctctctgggttcttctcg 296  Q
    || | | || ||||||| ||  ||| || |||||||||||| | |||||||||    
T  11508764 ttcggagaatttgatgaattactactgtaaaatctctctctagattcttctcg 11508712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 18147753 - 18147605
Alignment:
Q  153 aaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaata-aaactccccc--ttacctctagtttg 248  Q
    |||| |||||||||| |||||||||||||||   ||||||| |||||||||||||||| || ||||||||||| | ||||||||  |||||||||||| |    
T  18147753 aaaggattaagaaaacaataaaaattaacaatttttcactacccacatgagtacacaacccttatgatgaatagagactccccccattacctctagttcg 18147654  T
Q  249 cataa-ttgatgatttgttacggtgaaatctctctctgggttcttctcg 296  Q
     | || ||||||| ||  ||||| ||||||||||||| | |||||||||    
T  18147653 gagaatttgatgaattcctacggcgaaatctctctctagattcttctcg 18147605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 3387273 - 3387340
Alignment:
Q  160 taagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaa 226  Q
    |||| ||||||| ||| ||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  3387273 taaggaaataatcaaatttaacaacccttcactacccacatgagtacacaacccttatgatgaataaa 3387340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 32945355 - 32945455
Alignment:
Q  214 tatgatgaataaaactccccc-ttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtc 311  Q
    ||||||||||| ||||||||| ||||||||||||| ||  ||||||||||||  |||| ||||||||||||  |  ||||||| |||||||||||||| |    
T  32945355 tatgatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctctaag--ttcttctggctattcctctttgcc 32945452  T
Q  312 tct 314  Q
    |||    
T  32945453 tct 32945455  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 33721244 - 33721329
Alignment:
Q  218 atgaataaa-actcccccttacctctagttt-gcataattgatgatttgttacggt-gaaatctctctctgggttcttctcgctat 300  Q
    ||||||||| ||||||||||| ||||||||| ||| ||| ||||| ||  ||| || ||||||||||||| |||||||||||||||    
T  33721244 atgaataaacactcccccttatctctagttttgcagaatagatgaatttctaccgttgaaatctctctctaggttcttctcgctat 33721329  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 40391386 - 40391484
Alignment:
Q  217 gatgaataaaactcccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| |||  || | |||||||||||| | ||||||||||||||||| |||||||||||    
T  40391386 gatgaataaaactcccccttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctcgctattcatctttgtctct 40391484  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 17290672 - 17290734
Alignment:
Q  252 aattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    ||||||| ||||  |||||| |||||||||||| ||||||||||| |||||||| ||||||||    
T  17290672 aattgataatttcatacggtaaaatctctctctaggttcttctcgttattcctccttgtctct 17290734  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 9883599 - 9883692
Alignment:
Q  172 aaaaattaacaacccttcactagccacatgagtacacaatcct-atgatgaata-aaactcccccttacctctagtttgcataattgatgattt 263  Q
    |||||||||||| ||||| | | |||||||| ||||||| ||| ||| | |||| |||||||||| ||||||||||||| | ||||||||||||    
T  9883599 aaaaattaacaatccttcgccatccacatgattacacaacccttatggtaaatagaaactcccccatacctctagtttgtagaattgatgattt 9883692  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 9883280 - 9883320
Alignment:
Q  174 aaattaacaacccttcactagccacatgagtacacaatcct 214  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  9883280 aaattaacaacccttaactacccacatgagtacacaatcct 9883320  T

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Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 160380 - 160457
Alignment:
Q  162 agaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcccccttac 238  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||||    
T  160380 agaaaacaatgaaaattaacaacccttcactacccacatgagtaaacaacccttatgatgaataaaactcccccttac 160457  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 32623677 - 32623585
Alignment:
Q  222 ataaaactcccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||  ||||||||||||||||||| | ||||||||| |||||||||||| ||||    
T  32623677 ataaaactccccct-acctctagttttgcaaaattgatgattttctacggtgaaatctctctctagattcttctcgttattcctctttgcctct 32623585  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 34491530 - 34491398
Alignment:
Q  104 aaaatcaaacatataattacagcaacacgaattaaacacatactcatcaaaagaattaagaaaataataaaaattaacaacccttcactagccacatgag 203  Q
    ||||||||||||||||||| |||||   ||||| |||| | | | |||||| |||| ||||||| || |||||||||||| ||||||| | |||||||||    
T  34491530 aaaatcaaacatataattatagcaat--gaatttaacataaaattatcaaaggaat-aagaaaacaacaaaaattaacaatccttcacaacccacatgag 34491434  T
Q  204 tacacaa-tcctatgatgaataaaactcccccttac 238  Q
    |||  || || ||||||||||||||||| |||||||    
T  34491433 tacgtaactcttatgatgaataaaactctcccttac 34491398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 16093554 - 16093629
Alignment:
Q  234 cttacctctagtttgcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttg 309  Q
    ||||||||||||||||| || |||||| ||  ||| ||||||||||||||| ||||| ||||||||||| ||||||    
T  16093554 cttacctctagtttgcaaaagtgatgaatttctacagtgaaatctctctctaggttcctctcgctattcatctttg 16093629  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 27387020 - 27386921
Alignment:
Q  217 gatgaataaaactcccc-cttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    |||||||||||| |||| |||||||||||||| ||  |||| |||||||  ||||||||||||||||||| |||||||||||| || |||| ||| ||||    
T  27387020 gatgaataaaacccccctcttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctcgccatgcctccttgcctct 27386921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 6880765 - 6880726
Alignment:
Q  91 caattcagaaacgaaaatcaaacatataattacagcaaca 130  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  6880765 caattcagaaacgaaaatcaaacatataattacggcaaca 6880726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 6875249 - 6875210
Alignment:
Q  91 caattcagaaacgaaaatcaaacatataattacagcaaca 130  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  6875249 caattcagaaacgaaaatcaaacatataattgcggcaaca 6875210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 281
Target Start/End: Original strand, 39176386 - 39176519
Alignment:
Q  153 aaagaattaagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaata-aaact--cccccttacctctag-ttt 247  Q
    |||| |||||||||| ||||||||||||||| | ||||||| |||||||||||||||| || ||||||||||| | |||  |||| |||||||||| |||    
T  39176386 aaaggattaagaaaacaataaaaattaacaatctttcactacccacatgagtacacaacccttatgatgaatagagacttcccccattacctctagtttt 39176485  T
Q  248 gcataattgatgatttgttacggtgaaatctctc 281  Q
    ||  ||||||||||||  || |||||||||||||    
T  39176486 gcgaaattgatgattttctatggtgaaatctctc 39176519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 28710673 - 28710634
Alignment:
Q  91 caattcagaaacgaaaatcaaacatataattacagcaaca 130  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28710673 caattcagaaacgaaaatcaaacatataattacaacaaca 28710634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 24068061 - 24068123
Alignment:
Q  172 aaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcccc 233  Q
    |||||||||||||||||||||| ||||| | |||||||| || |||||||||| |||||||||    
T  24068061 aaaaattaacaacccttcactacccacacgcgtacacaacccttatgatgaatgaaactcccc 24068123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 24186501 - 24186539
Alignment:
Q  92 aattcagaaacgaaaatcaaacatataattacagcaaca 130  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  24186501 aattcagaaacgaaaatcaaacatataattacggcaaca 24186539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 39436029 - 39435973
Alignment:
Q  227 actcccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctct 282  Q
    ||||||||||||||||||||| |   ||||||||||||  |||||||||||||||||    
T  39436029 actcccccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctct 39435973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 91082 - 91160
Alignment:
Q  173 aaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcc-cccttacctctagtttgc 249  Q
    ||||||||||||||||||||| ||||||||||||| |  || || ||||||||||||||| ||||||||||||||||||    
T  91082 aaaattaacaacccttcactacccacatgagtacatatcccttacgatgaataaaactcctcccttacctctagtttgc 91160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 12786177 - 12786315
Alignment:
Q  153 aaagaattaagaaaataataaaaattaacaacccttcact----agccacatgagtacacaatcc-tatgatgaata-aaactccccc--ttacctctag 244  Q
    |||| |||||||||| ||||||||||||||| | ||||||    | |||||||||||||||| || ||||||||||| | ||||||||  ||||||||||    
T  12786177 aaaggattaagaaaacaataaaaattaacaatctttcactacccacccacatgagtacacaacccttatgatgaatagagactccccccattacctctag 12786276  T
Q  245 tttgcataa-ttgatgatttgttacggtgaaatctctct 282  Q
    |||| | || ||||||| ||  |||||||||||||||||    
T  12786277 tttggagaatttgatgaattcctacggtgaaatctctct 12786315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 18513889 - 18513810
Alignment:
Q  229 tcccccttacctctagttt-gcataattgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctt 307  Q
    |||||||||||| |||||| ||  ||||||||||||  || | | |||||||||||| |||||||||| |||||||||||    
T  18513889 tcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttctcactattcctctt 18513810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 41136847 - 41136799
Alignment:
Q  162 agaaaataataaaaattaacaacccttcactagccacatgagtacacaa 210  Q
    |||||| ||| ||||||||||||| ||||||| ||||||||||| ||||    
T  41136847 agaaaacaatgaaaattaacaaccattcactacccacatgagtatacaa 41136799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 12303 - 12377
Alignment:
Q  160 taagaaaataataaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcccc 233  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||| |  || || |||||||||||||||||    
T  12303 taagaaaataaccaaaattaacaacccttcactacccacatgagtacatatcccttacgatgaataaaactcccc 12377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 182968 - 183053
Alignment:
Q  230 cccccttacctctagtttgcataa-ttgatgatttgttacggtgaaatctctctctgggttcttctcgctattcctctttgtctct 314  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||||||||| |||  |||| |||| |||| |||| ||| ||||    
T  182968 cccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatctacgttcctctccctatgcctccttgcctct 183053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 29143 - 29205
Alignment:
Q  172 aaaaattaacaacccttcactagccacatgagtacacaatcc-tatgatgaataaaactcccc 233  Q
    ||||||||| |||||||||||| |||||||| ||||||| || || | |||||||||||||||    
T  29143 aaaaattaaaaacccttcactacccacatgattacacaacccttacgctgaataaaactcccc 29205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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