View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11142_high_4 (Length: 589)
Name: NF11142_high_4
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11142_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 36489934 - 36490506
Alignment:
| Q |
1 |
aggcaagggtgacatatttgatagttagatatataattaatatgaaggtgatatatctgcaatgttctttctctttgtgctacacttttctacagtttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36489934 |
aggcaagggtgacatatttgatagttagatatataattaatatgaaggtgatatatctgcaatgttctatctctttgtgctacacttttctacagtttta |
36490033 |
T |
|
| Q |
101 |
tgggactgaacatttaattaaaaatatccaatgtagataaaaataaaa---ttattagttcctcgatcatcaggactgtgagaattttaagtaaagaaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490034 |
tgggactgaacatttaattaaaaatatccaatgtagataaaaaaaaaaatattattagttcctcgatcatcaggactgtgagaattttaagtaaagaaaa |
36490133 |
T |
|
| Q |
198 |
agttaataacacattatcagataagtggagatccaagtcacagtggaataaaattactaaacaagagaaggatgcgcatatattgatttgctcgaagttt |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490134 |
agttaataacacattatcggataagtggagatccaagtcacagtggaataaaattactaaacaaaagaaggatgcgcatatattgatttgctcgaagttt |
36490233 |
T |
|
| Q |
298 |
ttcgaacctttctccaacagacaatggagtttctttatgtgtgttctgttctgtctgcatttctttcttccttccttcatgcaatttataacctatactc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36490234 |
ttcgaacctttctccaacagacaatggagtttctttatgtgtgttctgttctgtctgcatttctttcttccttccttcatgcaatttataacc--tactc |
36490331 |
T |
|
| Q |
398 |
acacatgatttttcaattaatttgtatgactaactattaatacaaaatcacaaggatctatttctttgaactcagtaatatccgaatgtttaacttaatt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490332 |
acacatgatttttcaattaatttgtatgactaactattaatacaaaatcacaaggatctatttctttgaactcagtaatatccgaatgtttaacttaatt |
36490431 |
T |
|
| Q |
498 |
ataatgctttatcatgcttccataattagagtcagtttttccttaaataataaatgagaatctcatgaatgtatt |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36490432 |
ataatgctttatcatgcttccataattagagtcagtttttccttaaataataaatgagaatctcgtgaatgtatt |
36490506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University