View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11142_high_44 (Length: 311)

Name: NF11142_high_44
Description: NF11142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11142_high_44
NF11142_high_44
[»] chr6 (8 HSPs)
chr6 (103-214)||(31442516-31442627)
chr6 (104-159)||(26840415-26840470)
chr6 (103-173)||(31665629-31665700)
chr6 (104-212)||(7867910-7868018)
chr6 (106-173)||(15296147-15296215)
chr6 (100-159)||(26839985-26840044)
chr6 (104-210)||(826696-826802)
chr6 (104-188)||(20915983-20916067)
[»] chr7 (5 HSPs)
chr7 (104-214)||(20077302-20077412)
chr7 (104-160)||(48850726-48850782)
chr7 (104-214)||(4407779-4407887)
chr7 (104-159)||(11072196-11072251)
chr7 (104-160)||(39742308-39742364)
[»] chr8 (7 HSPs)
chr8 (102-214)||(26981033-26981145)
chr8 (104-214)||(26083903-26084013)
chr8 (103-173)||(42315341-42315412)
chr8 (104-218)||(23828343-23828458)
chr8 (103-150)||(7496757-7496804)
chr8 (142-214)||(5334311-5334383)
chr8 (104-160)||(42932716-42932772)
[»] chr2 (6 HSPs)
chr2 (107-160)||(21922337-21922390)
chr2 (104-174)||(38996520-38996590)
chr2 (103-160)||(6667462-6667519)
chr2 (103-159)||(32281485-32281541)
chr2 (104-186)||(28125536-28125618)
chr2 (103-160)||(28926074-28926132)
[»] chr5 (4 HSPs)
chr5 (104-173)||(37337323-37337393)
chr5 (103-173)||(26110687-26110758)
chr5 (105-160)||(22780073-22780128)
chr5 (142-214)||(9045161-9045233)
[»] chr4 (8 HSPs)
chr4 (104-173)||(12094856-12094925)
chr4 (104-160)||(9199512-9199568)
chr4 (104-160)||(24257703-24257759)
chr4 (107-174)||(9451245-9451312)
chr4 (115-214)||(10427608-10427706)
chr4 (103-177)||(6898749-6898823)
chr4 (104-214)||(9199750-9199860)
chr4 (104-160)||(27067874-27067930)
[»] chr3 (7 HSPs)
chr3 (103-160)||(15291460-15291517)
chr3 (103-174)||(39484808-39484880)
chr3 (104-160)||(1529165-1529222)
chr3 (103-160)||(52041398-52041455)
chr3 (104-151)||(49235500-49235547)
chr3 (103-160)||(15996393-15996450)
chr3 (102-134)||(1141742-1141774)
[»] chr1 (3 HSPs)
chr1 (104-159)||(15700721-15700776)
chr1 (103-153)||(44508600-44508650)
chr1 (116-153)||(24819195-24819232)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 31442516 - 31442627
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgc 202  Q
    |||||||||| ||||||||||||||||||||| || || ||||||||||||||||||| | |||| ||||||  ||||| |||||| || |||| | |||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgc 31442615  T
Q  203 ttatcctaatca 214  Q
    || |||||||||    
T  31442616 ttttcctaatca 31442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 26840415 - 26840470
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 159  Q
    ||||||||||||||||||||||||||||||| || | | |||||||| ||||||||    
T  26840415 atctttctttctaaagcttgtttggtcaagccatcattaaccctaatcttaaccta 26840470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 31665700 - 31665629
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaaaaatttctctcca 173  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||||| ||||||||| | |||| |||||    
T  31665700 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 7868018 - 7867910
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 203  Q
    ||||||||| ||||||||| | ||||||||||||  | ||||||||||| | ||||| | |||| ||||||||| ||| |||| | |||| || | ||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgct 7867919  T
Q  204 tatcctaat 212  Q
    |||| ||||    
T  7867918 tatcttaat 7867910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  106 ctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctcca 173  Q
    ||||||| ||||||||||||| |||||||||||| | ||||||| ||||||||||| | |||| |||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 26839985 - 26840044
Alignment:
Q  100 atgtatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 159  Q
    |||||||||||||||||||| ||||||| |||||| || | | |||||||| ||||||||    
T  26839985 atgtatctttctttctaaagtttgtttgatcaagccatcattaaccctaatcttaaccta 26840044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 826802 - 826696
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 203  Q
    ||||||||| ||||| ||||| ||||||||||||   | ||| |||||||||||||| | |||| |||||| | |||| |||| | ||||| ||| ||||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgttagtgct 826703  T
Q  204 tatccta 210  Q
    | |||||    
T  826702 tttccta 826696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 20916067 - 20915983
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaa 188  Q
    ||||||||| ||||||||||| || |||||| |||   |||| |||||||||||||| | |||| ||||||  ||||| ||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaa 20915983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 20077412 - 20077302
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 203  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||| | |||| ||||||  ||||| |||||| ||  ||||| ||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttagtgct 20077313  T
Q  204 tatcctaatca 214  Q
    | |||||||||    
T  20077312 tttcctaatca 20077302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 48850726 - 48850782
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    ||||||||||||||||||||| || |||||||||   |||||||||| |||||||||    
T  48850726 atctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaa 48850782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 4407779 - 4407887
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 203  Q
    ||||||||| |||||||  || ||||||||| ||| | ||||||||||||||||||| | |||| ||||||   |||| |||||| || |||||| || |    
T  4407779 atctttcttactaaagc--gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttagtgtt 4407876  T
Q  204 tatcctaatca 214  Q
    | |||||||||    
T  4407877 tttcctaatca 4407887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 11072251 - 11072196
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 159  Q
    |||||||||||||||||||||  |||||||| ||  || |||||||||||||||||    
T  11072251 atctttctttctaaagcttgtccggtcaagcaatccctaaccctaattttaaccta 11072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 39742364 - 39742308
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    ||||||||| |||||||||||||| |||||||||   | |||||||| |||||||||    
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaa 39742308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 26981033 - 26981145
Alignment:
Q  102 gtatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattg 201  Q
    ||||||||||| |||||||||||||| |||||| ||| | ||||||||||||||||||| | |||  ||||||  ||||| |||||| || |||||| ||    
T  26981033 gtatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttagtg 26981132  T
Q  202 cttatcctaatca 214  Q
     || |||||||||    
T  26981133 tttttcctaatca 26981145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 26083903 - 26084013
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 203  Q
    ||||||||| ||||||||||| ||||||||| ||| | ||||||||||||||||||| | |||| ||||||  || || |||||| || | |||| ||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  204 tatcctaatca 214  Q
    | |||||||||    
T  26084003 tttcctaatca 26084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 42315341 - 42315412
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaaaaatttctctcca 173  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||||| ||||||||| | |||| |||||    
T  42315341 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 23828343 - 23828458
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctccattg-tccaaccattaatttttccttattg 201  Q
    ||||||||| ||| |||||||||||||||||||| | | ||||||| ||||||||||| | |||| ||||| || | || || ||||||  |||||| ||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctccaatgcttcagcc-ttaattactccttagtg 23828441  T
Q  202 cttatcctaatcagcat 218  Q
     ||||||||||||||||    
T  23828442 tttatcctaatcagcat 23828458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 7496757 - 7496804
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaat 150  Q
    |||||||||| |||||||||||||| |||||||||| || ||||||||    
T  7496757 tatctttcttactaaagcttgtttgatcaagctatagctgaccctaat 7496804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 5334311 - 5334383
Alignment:
Q  142 taccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgcttatcctaatca 214  Q
    ||||||||||||||||||| | |||| ||||||  ||||| |||||| || || ||| ||||| |||||||||    
T  5334311 taccctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgcttttcctaatca 5334383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 42932716 - 42932772
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    ||||||||| ||||||||||| || |||||| ||| | || ||||||||||||||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaa 42932772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 21922337 - 21922390
Alignment:
Q  107 tttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    |||||||||||||||||| || |||||||||||||||||||||| |||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaa 21922390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 38996590 - 38996520
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccat 174  Q
    ||||||||| ||||||||||| || ||||||||||  |||||||||||||||||||| | |||| ||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccat 38996520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 6667462 - 6667519
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||  ||||||||    
T  6667462 tatctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaa 6667519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 32281485 - 32281541
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 159  Q
    |||||||||| |||||| ||||||||||||||||| | | |||||||||||||||||    
T  32281485 tatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaaccta 32281541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 28125536 - 28125618
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccatt 186  Q
    ||||||||| ||||||||||| ||||||||||||  | ||||||||||| | ||||| | |||| ||||||||| ||| ||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatt 28125618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 28926074 - 28926132
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaa 160  Q
    |||||||||| ||||||||||| |||||||||||| | | ||||||||| |||||||||    
T  28926074 tatctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaa 28926132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 37337323 - 37337393
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctcca 173  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||| | |||| |||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 26110687 - 26110758
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaa-ttttaacctaaaaatttctctcca 173  Q
    |||||||||| ||||| |||||||||||||||||||| | ||||||| ||||||||||| | |||| |||||    
T  26110687 tatctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 22780128 - 22780073
Alignment:
Q  105 tctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    |||||||||||||||||||| || |||||||||   |||||||||| |||||||||    
T  22780128 tctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaa 22780073  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 9045161 - 9045233
Alignment:
Q  142 taccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgcttatcctaatca 214  Q
    ||||||||||||||||||| | |||| ||||||  || || |||||| || |||||| ||||| |||||||||    
T  9045161 taccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatca 9045233  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 12094925 - 12094856
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctcca 173  Q
    ||||||||| |||||||||||||||||||||||| |   |||||||||||||||||| | |||| |||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 9199512 - 9199568
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    ||||||||| ||||||||||| ||||||||| ||| | |||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaa 9199568  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 24257703 - 24257759
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    ||||||||| ||||||||||||||||||||| ||   | ||||||||||||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaa 24257759  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 9451245 - 9451312
Alignment:
Q  107 tttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccat 174  Q
    |||||| ||||||||||| ||||||||||||   | |||||||||||||||||| | |||| ||||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccat 9451312  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 10427706 - 10427608
Alignment:
Q  115 taaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgcttatcctaatca 214  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||| || ||||| ||||||  ||||| |||||| || | |||| || || |||||||||    
T  10427706 taaaggttgtttggtcaagcaatatcataccctaattttaacct-aatatttccctccatcatccaagcattaaattcttcttagtgtttttcctaatca 10427608  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 6898823 - 6898749
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgt 177  Q
    |||||||||| |||||||||||||| |||||||||   | |||||||| ||||||||| | ||||  ||||||||    
T  6898823 tatctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccattgt 6898749  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 9199750 - 9199860
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaaaaatttctctccattgtccaaccattaatttttccttattgct 203  Q
    ||||||||| ||||||||||| ||||||||| ||| | || || | | ||||||||| | |||| ||||||  ||||| |||||| || |||||| | ||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttagttct 9199849  T
Q  204 tatcctaatca 214  Q
    | |||||||||    
T  9199850 tttcctaatca 9199860  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 27067874 - 27067930
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    ||||||||| ||||||||||||||||||| ||||    |||||||||||||| ||||    
T  27067874 atctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaa 27067930  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 15291460 - 15291517
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    |||||||||| ||||||||||||||||||||||||   |||||||||| |||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaa 15291517  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 39484880 - 39484808
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataactt-accctaattttaacctaaaaatttctctccat 174  Q
    |||||||||| |||||||||||||||||||||||||  || |||||| ||||||||||| | |||| ||||||    
T  39484880 tatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccat 39484808  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 1529165 - 1529222
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaatt-ttaacctaa 160  Q
    ||||||||| |||||||||||||||||||||||| | | ||||||||| |||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaa 1529222  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 52041455 - 52041398
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    |||||||||| ||||||||||| ||||||||||||   | ||||||||||||||||||    
T  52041455 tatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaa 52041398  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaatt 151  Q
    ||||||||| |||||| ||||||||||||||||| | |||||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 15996450 - 15996393
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaattttaacctaa 160  Q
    |||||||||| ||||||||||| || |||||||||   ||||||||||| ||||||||    
T  15996450 tatctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaa 15996393  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 1141742 - 1141774
Alignment:
Q  102 gtatctttctttctaaagcttgtttggtcaagc 134  Q
    ||||||||||| |||||||||||||||||||||    
T  1141742 gtatctttcttactaaagcttgtttggtcaagc 1141774  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 15700721 - 15700776
Alignment:
Q  104 atctttctttctaaagcttgtttggtcaagctataacttaccctaattttaaccta 159  Q
    ||||||||| |||||| ||||||||||||||||| | | |||||||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaaccta 15700776  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 44508600 - 44508650
Alignment:
Q  103 tatctttctttctaaagcttgtttggtcaagctataacttaccctaatttt 153  Q
    |||||||||||||||||||||| || ||||||||| ||| |||||||||||    
T  44508600 tatctttctttctaaagcttgtctgatcaagctattactaaccctaatttt 44508650  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 24819195 - 24819232
Alignment:
Q  116 aaagcttgtttggtcaagctataacttaccctaatttt 153  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24819195 aaagcttgtttggtcaagctattactaaccctaatttt 24819232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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